Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq4878 100 3e-16 >seq4878 Length=25969111 Score = 100 bits (110), Expect = 3e-16 Identities = 230/344 (67%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| || |||| |||| ||| || ||||| |||||||||| |||| | ||| | Sbjct 8146447 GCCAGCTCCTTAGGAGACGGAAAGT-GTCGACGTGGATGAAAGCGTTTCCCTGCACGAAG 8146389 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || | || ||||| || | || ||||| || | ||||| | || | ||| | Sbjct 8146388 TTCTGATAGTTCTCCCTTGGTGGCCCGAGCACCACAGGTACGGTGCCGACGGAAAGTGGG 8146329 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| | ||| || || || ||||| |||| ||| ||||||| || || | || ||| Sbjct 8146328 TTGTACAATTTCTCAGTGATGTAGTCTTTGTGAACG-AGTTCTCGAATGCCAAGTAAAAT 8146270 Query 177126 TTACAGGAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTC 177185 |||||| | | | |||| |||| | |||| || || || || | | | Sbjct 8146269 TTACAGCTGGCAATTGTGGGGAAATAGTCCTGGTCGGAAATGTACTCACCAAAAGCCTGT 8146210 Query 177186 CCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCACGTGG 177245 |||||| |||| | || ||||| || | || ||||||| || ||| ||||| Sbjct 8146209 CCGTATGCATGAACCTCAATGTGCTTGTACAATTCATTGTAGTATTTCACTCTGACGTGA 8146150 Query 177246 TCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTT 177289 || ||||||||||||||||| ||| |||| | |||| |||| Sbjct 8146149 TCTGGGTTCCAATTGCTGACGATCCAACAAATGAGCTTGTTCTT 8146106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578396657804800