Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4867 131 1e-25 seq4869 129 4e-25 >seq4867 Length=22528368 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | || | ||||| ||| || ||| ||| || || |||||||| ||||| Sbjct 1269000 ACCACCTCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1268941 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| | || ||||| ||||| ||||| || |||| ||||||||| || | || Sbjct 1268940 CAGTGTGCGTCCATCTTCCAACTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGG 1268881 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || || | ||| ||| ||||||||| | || | Sbjct 1268880 AATGCCTTCCTTGTCCTGGATCTTAGCCTTGA-CATTCTCAATGGTGTCGCTGGGCTCAA 1268822 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | ||| || |||||||||||||| Sbjct 1268821 CCTCAAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1268773 Score = 107 bits (118), Expect = 1e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| || ||| ||| || || |||||||| ||||| || |||||| | || |||| || Sbjct 1269204 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCCAGCTG 1269145 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||| ||||| || |||| ||||||||| || | || | ||||| ||||| || || Sbjct 1269144 TTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 1269085 Query 33666 CTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || | | | ||| |||||| |||| |||||| |||| ||||| || || || | Sbjct 1269084 GGCCTTGA-CGTTCTCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAG 1269026 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | | || ||||| |||||||||||| Sbjct 1269025 TCAGGGTCTTTACGAAGATCTGCATA 1269000 >seq4869 Length=19992947 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| | ||||| ||| | ||| |||||| || |||||||| ||||| Sbjct 16670551 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGAC 16670492 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||||||| | || |||| ||||| || ||||| ||||| | |||||| || | || Sbjct 16670491 AGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGA 16670432 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || ||| |||| || | |||||| |||| || || Sbjct 16670431 ATGCCTTCTTTGTCCTGGATCTTGGCCTTC-ACATTCTCAATGGTGTCACTTGGCTCGAC 16670373 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || ||||| |||| || || |||||||||||||| Sbjct 16670372 CTCAAGGGTGATGGTCTTACCAGTTAGGGTCTTGACAAAGATCTGCAT 16670325 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| | ||| | ||||| ||| | ||| |||||| || |||||||| ||||| Sbjct 16670780 ACCTCCTCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGA 16670721 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| | || |||| ||||| || ||||| |||| | |||||| || | || Sbjct 16670720 CAGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 16670661 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || || || | |||| || | ||||||||||| || | Sbjct 16670660 AATGCCTTCTTTGTCCTGGATCTT-TGCCTTGACATTCTCAATGGTGTCGCTTGGCTCGA 16670602 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || ||||| || || || || ||||||||||| Sbjct 16670601 CCTCGAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 16670553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328684418280960