Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4867 96.9 8e-15 seq4869 86.0 1e-11 >seq4867 Length=22528368 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | || |||||| |||||| | || Sbjct 1269016 AAGACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGTGACACCATTGAGAAC 1269075 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || | || |||||| Sbjct 1269076 GTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATCTTC 1269135 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || ||| ||||||||||| | || || |||| |||||| ||||||| ||||| Sbjct 1269136 GCCGGTAAACAGCTGGAAGATGGACGCACGCTGTCCGACTACAACATCCAGAAGGAGTCC 1269195 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || |||||| || | || || Sbjct 1269196 ACCCTCCATCTTGTTCTGCGTCTCCG 1269221 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||||| || || || || |||||| | || || || ||| Sbjct 1268776 CAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAGCGAC 1268835 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || ||||| ||| || ||| || Sbjct 1268836 ACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAG 1268895 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| || ||||||||||||||| | || || |||| |||||| || Sbjct 1268896 CGTCTGATCTTCGCCGGTAAACAGTTGGAAGATGGACGCACACTGTCCGACTACAACATC 1268955 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || || || || Sbjct 1268956 CAGAAGGAGTCCACCCTCCATCTGGT 1268981 >seq4869 Length=19992947 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| || || |||||||| ||| || ||| || || || ||||| Sbjct 16670628 GTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGCAGAGGCTGATCTTT 16670687 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| ||||||||||| | || || |||| |||||| ||||||||||||| Sbjct 16670688 GCTGGCAAACAGCTGGAAGATGGACGCACACTGTCCGACTACAACATCCAGAAAGAGTCC 16670747 Query 206365 AC 206366 || Sbjct 16670748 AC 16670749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181746785517848