Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4886 143 4e-28 seq586 143 4e-28 seq4875 136 6e-26 seq4871 136 6e-26 seq4866 136 6e-26 seq409 136 6e-26 seq172 136 6e-26 seq4879 132 7e-25 seq206 127 3e-23 seq4888 113 6e-19 seq4872 107 3e-17 seq4869 93.3 6e-13 >seq4886 Length=30003503 Score = 143 bits (158), Expect = 4e-28 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 724977 ATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTG 725036 || |||||||||||||| |||||||| |||| ||||||| | || ||| ||||||| Sbjct 23263165 ATAATGAACTCGTTTGTTAACGACATCTTCGAGCGCATCGCCGGAGAAGCCTCTCGCCTG 23263224 Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096 |||| | |||||||||| ||| ||| | || ||||||||||| |||||||||||| Sbjct 23263225 GCGCATTACAACAAGCGCTCCACTATCACATCCCGGGAGATCCAGACGGCCGTGCGCCTG 23263284 Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| || || ||||||| |||||||| ||||||||||| Sbjct 23263285 CTCCTGCCGGGAGAGCTGGCCAAACACGCCGTGTCCGAGGGCAC 23263328 >seq586 Length=84231 Score = 143 bits (158), Expect = 4e-28 Identities = 170/229 (74%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||| || || |||||||| || || |||| |||| ||| |||| | | Sbjct 82457 TCTACAAAGTCCTGAAGCAGGTTCATCCTGACACCGG-----CATC-TCCTCCAAGGCGA 82510 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| | ||| | || Sbjct 82511 TGGGCATCATGAACTCTTTCGTCAACGACATCTTCGAGCGCATCGCCGGTGAGTCGTCTC 82570 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 |||| |||| || |||||||||| ||| ||| | | ||||||||||||||||||| Sbjct 82571 GCCTCGCGCACTACAACAAGCGCTCCACCATCACTTCTAGAGAGATCCAGACCGCCGTGC 82630 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||| | ||| ||| || ||||||| |||||||| ||||||||||| Sbjct 82631 GTCTGCTGCTGCCCGGAGAGCTGGCCAAACACGCCGTGTCCGAGGGCAC 82679 >seq4875 Length=22346808 Score = 136 bits (150), Expect = 6e-26 Identities = 167/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| || || |||||||| || ||| |||| || |||||||| | | ||| Sbjct 13480515 TACAAAGTCCTGAAGCAGGTTCATCCCGACACCG---GGATCTCCTCCAA---GGCGATG 13480568 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | || || ||| Sbjct 13480569 GGAATCATGAACTCTTTCGTCAACGACATCTTCGAGCGCATCGCCGGTGAAGCGTCTCGT 13480628 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || || | || |||||||||| ||| ||| || | |||||||||||||||||||| Sbjct 13480629 CTCGCTCACTACAACAAGCGCTCCACCATCACATCGAGAGAGATCCAGACCGCCGTGCGT 13480688 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| ||| || ||||||| |||||||| || |||||||| Sbjct 13480689 CTGCTGCTGCCCGGAGAGCTGGCCAAACACGCCGTGTCTGAGGGCAC 13480735 >seq4871 Length=24933493 Score = 136 bits (150), Expect = 6e-26 Identities = 167/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| || || |||||||| || ||| || |||| |||||||| | | ||| Sbjct 7625198 TACAAAGTCCTGAAGCAGGTTCATCCCGACAC---TGGGATCTCCTCCAA---GGCGATG 7625251 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | || || ||| Sbjct 7625252 GGAATCATGAACTCTTTCGTCAACGACATCTTCGAGCGCATCGCCGGTGAAGCGTCTCGT 7625311 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || || | || |||||||||| ||| ||| || | |||||||||||||||||||| Sbjct 7625312 CTCGCTCACTACAACAAGCGCTCCACCATCACATCGAGAGAGATCCAGACCGCCGTGCGT 7625371 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| ||| || ||||||| |||||||| || |||||||| Sbjct 7625372 CTGCTGCTGCCCGGAGAGCTGGCCAAACACGCCGTGTCTGAGGGCAC 7625418 Score = 109 bits (120), Expect = 8e-18 Identities = 146/202 (72%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| || || |||||||| || ||| |||| || |||||||| | | ||| Sbjct 7622895 TACAAAGTCCTGAAGCAGGTTCATCCCGACACCG---GGATCTCCTCCAA---GGCGATG 7622948 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | || || ||| Sbjct 7622949 GGAATCATGAACTCTTTCGTCAACGACATCTTCGAGCGCATCGCCGGTGAAGCGTCTCGT 7623008 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || || | || |||||||||| ||| ||| || | |||||||||||||||||||| Sbjct 7623009 CTCGCTCACTACAACAAGCGCTCCACCATCACATCGAGAGAGATCCAGACCGCCGTGCGT 7623068 Query 725094 CTGATCATGCGCGGCGAACTGG 725115 ||| | ||| ||| || |||| Sbjct 7623069 CTGCTGCTGCCCGGAGAGCTGG 7623090 >seq4866 Length=17973520 Score = 136 bits (150), Expect = 6e-26 Identities = 167/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| || || |||||||| || ||| |||| || |||||||| | | ||| Sbjct 1618594 TACAAAGTCCTGAAGCAGGTTCATCCCGACACCG---GGATCTCCTCCAA---GGCGATG 1618647 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | || || ||| Sbjct 1618648 GGAATCATGAACTCTTTCGTCAACGACATCTTCGAGCGCATCGCCGGTGAAGCGTCTCGT 1618707 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || || | || |||||||||| ||| ||| || | |||||||||||||||||||| Sbjct 1618708 CTCGCTCACTACAACAAGCGCTCCACCATCACATCGAGAGAGATCCAGACCGCCGTGCGT 1618767 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| ||| || ||||||| |||||||| || |||||||| Sbjct 1618768 CTGCTGCTGCCCGGAGAGCTGGCCAAACACGCCGTGTCTGAGGGCAC 1618814 >seq409 Length=127645 Score = 136 bits (150), Expect = 6e-26 Identities = 167/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| || || |||||||| || ||| |||| || |||||||| | | ||| Sbjct 105057 TACAAAGTTCTGAAGCAGGTTCATCCCGACACCG---GGATCTCCTCCAA---GGCGATG 105004 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | || || ||| Sbjct 105003 GGAATCATGAACTCTTTCGTCAACGACATCTTCGAGCGCATCGCCGGTGAAGCGTCTCGT 104944 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || || | || |||||||||| ||| ||| || | |||||||||||||||||||| Sbjct 104943 CTCGCTCACTACAACAAGCGCTCCACCATCACATCGAGAGAGATCCAGACCGCCGTGCGT 104884 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| ||| || ||||||| |||||||| || |||||||| Sbjct 104883 CTGCTGCTGCCCGGAGAGCTGGCCAAACACGCCGTGTCTGAGGGCAC 104837 >seq172 Length=1055972 Score = 136 bits (150), Expect = 6e-26 Identities = 167/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| || || |||||||| || ||| |||| || |||||||| | | ||| Sbjct 838509 TACAAAGTCCTGAAGCAGGTTCATCCCGACACCG---GGATCTCCTCCAA---GGCGATG 838562 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | || || ||| Sbjct 838563 GGAATCATGAACTCTTTCGTCAACGACATCTTCGAGCGCATCGCCGGTGAAGCGTCTCGT 838622 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || || | || |||||||||| ||| ||| || | |||||||||||||||||||| Sbjct 838623 CTCGCTCACTACAACAAGCGCTCCACCATCACATCGAGAGAGATCCAGACCGCCGTGCGT 838682 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| ||| || ||||||| |||||||| || |||||||| Sbjct 838683 CTGCTGCTGCCCGGAGAGCTGGCCAAACACGCCGTGTCTGAGGGCAC 838729 Score = 136 bits (150), Expect = 6e-26 Identities = 167/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| || || |||||||| || ||| |||| || |||||||| | | ||| Sbjct 841369 TACAAAGTCCTGAAGCAGGTTCATCCCGACACCG---GGATCTCCTCCAA---GGCGATG 841422 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | || || ||| Sbjct 841423 GGAATCATGAACTCTTTCGTCAACGACATCTTCGAGCGCATCGCCGGTGAAGCGTCTCGT 841482 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || || | || |||||||||| ||| ||| || | |||||||||||||||||||| Sbjct 841483 CTCGCTCACTACAACAAGCGCTCCACCATCACATCGAGAGAGATCCAGACCGCCGTGCGT 841542 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| ||| || ||||||| |||||||| || |||||||| Sbjct 841543 CTGCTGCTGCCCGGAGAGCTGGCCAAACACGCCGTGTCTGAGGGCAC 841589 >seq4879 Length=12992599 Score = 132 bits (146), Expect = 7e-25 Identities = 139/183 (76%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 |||| |||| | ||| ||||||||||| || ||||||||||| |||| ||||||| Sbjct 9416269 CTCCTCCAAGGCGATGGGCATCATGAACTCTTTCGTCAACGACATCTTCGAGCGCATCGC 9416328 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 | ||| | |||||| |||| || |||||||||| ||| ||| | | ||||| Sbjct 9416329 CGGTGAGTCGTCTCGCCTCGCGCACTACAACAAGCGCTCCACAATCACTTCTAGAGAGAT 9416388 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 |||||||||||||| ||| | ||| ||| || ||||||| |||||||| |||||||| Sbjct 9416389 GCAGACCGCCGTGCGTCTGCTGCTGCCCGGAGAGCTGGCCAAACACGCCGTGTCCGAGGG 9416448 Query 725138 CAC 725140 ||| Sbjct 9416449 CAC 9416451 >seq206 Length=36454 Score = 127 bits (140), Expect = 3e-23 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 |||| |||| | ||| ||||||||||| || ||||||||||| |||| ||||||| Sbjct 7134 CTCCTCCAAGGCGATGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGC 7075 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 | ||| | |||||| || | | |||||||||| ||| ||| | | ||||| Sbjct 7074 CGGTGAGTCGTCTCGCCTCGCCCATTACAACAAGCGCTCCACCATCACTTCTAGAGAGAT 7015 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 ||||||||||||||| ||| | ||| ||| || ||||||| |||||||| |||||||| Sbjct 7014 CCAGACCGCCGTGCGTCTGCTGCTGCCCGGAGAGCTGGCCAAACACGCCGTGTCCGAGGG 6955 Query 725138 CAC 725140 ||| Sbjct 6954 CAC 6952 >seq4888 Length=31417778 Score = 113 bits (124), Expect = 6e-19 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| | ||| ||||||||||| || ||||||||||| |||| || |||| | || Sbjct 29391765 CAAGGCGATGGGCATCATGAACTCATTCGTCAACGACATTTTCGAGCGTATCGCCGGTGA 29391706 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 | | ||| || || | || |||||||||| ||| ||| || | ||||||||||| Sbjct 29391705 GTCGTCTCGTCTCGCTCACTACAACAAGCGCTCCACCATCACATCGAGAGAGATCCAGAC 29391646 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| ||| | ||| | ||| ||| || ||||||| |||||||| || |||||||| Sbjct 29391645 CGCTGTGAGACTGCTGCTGCCCGGAGAGCTGGCCAAACACGCCGTGTCTGAGGGCAC 29391589 >seq4872 Length=27116566 Score = 107 bits (118), Expect = 3e-17 Identities = 137/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||||| || | ||||| ||||||||||||||||| || ||| || |||| ||||||| Sbjct 23741731 CTCCAGCAGGGCCATGAGCATCATGAACTCGTTTGTTAATGACGTGTTCGAGCGCATCGC 23741672 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGC-GCGAGA 725076 || ||||| || || |||| || ||||||||| ||| ||| || || | ||| Sbjct 23741671 TACAGAGGCGTCCCGGCTAGCGCACTATAACAAGCGCTCCACCATC-ACAAGCAGAGAGG 23741613 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 | |||||||| || | || | ||| ||| ||||| |||| |||||||| || |||| Sbjct 23741612 TGCAGACCGCAGTCAGGCTCCTGCTGCCCGGGGAACTCGCCAAACACGCCGTGTCTGAGG 23741553 Query 725137 GCACCA 725142 | |||| Sbjct 23741552 GAACCA 23741547 >seq4869 Length=19992947 Score = 93.3 bits (102), Expect = 6e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 262124 GAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAG 262183 ||||| ||||| ||||||||| | |||||||||||| ||||| | |||||||||||| Sbjct 3228441 GAGACTGGCACACCCTACATGCTTTACAAGGACGCCTGCAACCGCAAGAGCAACCAGCAG 3228382 Query 262184 AACCTGGGCACCACGACAGAGGCCAACCTGTGCACCGAGATCGT 262227 ||||||||||||| | | ||||||||||| ||||| || Sbjct 3228381 AACCTGGGCACCATCAAATCCAGTAACCTGTGCACAGAGATAGT 3228338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177339743415856