Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4869 120 3e-22 seq4867 118 1e-21 >seq4869 Length=19992947 Score = 120 bits (132), Expect = 3e-22 Identities = 158/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || ||||| ||| || || ||| || ||||||||||| |||| || || || | || Sbjct 16670537 CAGCACCAGATGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGTCCATC 16670478 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||||||| || || ||||| ||||||| ||||||||| | |||| || || ||||| Sbjct 16670477 TTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 16670418 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||||| | | | | ||||| || | || ||||| | ||||| || Sbjct 16670417 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCGACCTCAAGGGTGATGGT 16670358 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 ||||| || | || || ||||| ||||||| ||||| Sbjct 16670357 CTTACCAGTTAGGGTCTTGACAAAGATCTGCA-TCTGT 16670321 >seq4867 Length=22528368 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| || |||||||| |||| || || || | || || Sbjct 1268982 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTC 1268923 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || ||| ||||| || || |||| ||||||||||| | ||||| || ||||||||| Sbjct 1268922 CAACTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 1268863 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | | |||||||| | || ||||| | ||||| || || Sbjct 1268862 GATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTT 1268803 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || |||||||| |||||||| Sbjct 1268802 GCCAGTCAGCGTCTTCACAAAGATCTGCAT 1268773 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || || || | || |||||||| ||||| || || Sbjct 1269192 CTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCCAGCTGTTTACCGGCGAA 1269133 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | ||||| || ||||||||| |||||| ||| | | Sbjct 1269132 GATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 1269073 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||||||| | ||||| || || || |||| || || || Sbjct 1269072 CTCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTAC 1269013 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1269012 GAAGATCTGCAT 1269001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450766056511040