Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4878 129 8e-25 seq255 111 2e-19 seq4869 98.7 1e-15 >seq4878 Length=25969111 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || || || |||||||||||||| || || | ||| | Sbjct 11651630 CCTCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 11651571 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || || | ||||||||| |||||||||||||| ||||| ||||| ||||| | Sbjct 11651570 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 11651511 Query 39759 CAACAAGTCTCTCTCC 39774 | || | ||||||||| Sbjct 11651510 CCACCACTCTCTCTCC 11651495 >seq255 Length=1984256 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || || | |||||||| ||||| ||||| | || | Sbjct 640791 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGACCTCTTTTCT 640850 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| | ||||||||||| |||||||| |||||||||||||| || || ||||| | Sbjct 640851 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACCGCAGCAAAAG 640910 Query 39759 CAACAAGTCTCTCTCC 39774 | || | || |||||| Sbjct 640911 CTACTAATCGCTCTCC 640926 >seq4869 Length=19992947 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || |||||||| | ||||||||| || ||||||||||| || ||||| ||||| ||| Sbjct 3229915 GTGCCAGCATTAAAGAGTGTAGGAGAAGCATGAGTGAACCACTTCTCAGACAGCAGGTTG 3229974 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || ||||||||||| | | | || ||| || ||| || || | | || | ||||| | Sbjct 3229975 TAGGTTTCAATAGCGGCTGCAATGTCCTCCTTATGGATGCCCACGGACACTCTCATCAGC 3230034 Query 70111 ATATGCTGAGGTCGTTC 70127 || ||||| || || || Sbjct 3230035 ATGTGCTGTGGGCGCTC 3230051 Score = 96.9 bits (106), Expect = 5e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 69321 TATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTT 69380 || ||||||||| || || ||||| ||||||| || ||||| || ||||| || ||||| Sbjct 3228337 TACTATCTCTGTGCACAGGTTACTGGATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTT 3228396 Query 69381 TTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGAT 69440 ||| ||||||||||||||||| || | || || ||||| || ||||||| || || Sbjct 3228397 GCGGTTGCAGGCGTCCTTGTAAAGCATGTAGGGTGTGCCAGTCTCTGTCTGAGACTCAAT 3228456 Query 69441 AAT 69443 || Sbjct 3228457 GAT 3228459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686866829872320