Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq898 100 2e-16 seq255 91.5 1e-13 seq4878 89.7 4e-13 seq4870 87.8 1e-12 >seq898 Length=903892 Score = 100 bits (110), Expect = 2e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 ||||||||||| || || ||| |||||| |||||||| || | | ||||| |||| Sbjct 821850 ATGGCATTGCCCCCCTGCCATGCGTTATGCCAGTTTTATGTGTCAGACGGTGAGTTGTCG 821909 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 || || |||| || | || ||||||||||| || || || || || ||||| || || Sbjct 821910 TGCCAGCTGTACCAGCGCTCTGGTGACATGGGTCTGGGTGTGCCATTCAACATTGCCAGC 821969 Query 41169 TATGCTCTGCTCACGTATATGATTGCACAC 41198 || || || ||||| || |||||||| ||| Sbjct 821970 TACGCACTACTCACCTACATGATTGCCCAC 821999 >seq255 Length=1984256 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 44115 ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174 |||||| ||||| ||| | || || ||||| | ||||||||||| ||||| || |||| Sbjct 640933 ATTCTTA-GGAGAGCGATTAGTAGCTTTTGCTGCGGTGGAAGGCATCTTCTTCTCTGGAT 640875 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 | ||||| ||||| | ||||| |||||| ||||| ||||||| || | || | || | Sbjct 640874 CATTTGCTGCCATCTACTGGTTGAAGAAAAGAGGTCTGATGCCCGGACTCACCTACTCCA 640815 Query 44235 ATGAGTTAATAAGTCGTGATGA 44256 |||| | || || | ||||| Sbjct 640814 ATGAACTCATCAGCAGAGATGA 640793 >seq4878 Length=25969111 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||| | || ||||| ||| | ||||||| ||||| || || || || || || || Sbjct 11650951 CGATTTACTCAGGAAGTCCAAGTGACAGAAGCCCGATGCTTCTACGGTTTCCAGATCGCA 11651010 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||| || ||||||||||| || |||| |||| |||||||||||| Sbjct 11651011 ATGGAAAACATTCACTCTGAAATGTACAGCCTGTTGATCAATACCTACATCAAAGAT 11651067 >seq4870 Length=28600511 Score = 87.8 bits (96), Expect = 1e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 47226 TTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAA 47285 |||||||||| ||| |||| || |||||| || | ||||| || ||||||||||| |||| Sbjct 17852527 TTTTAGGACTCTATAAAAAGTCTGGGAAATTAGTTTTTCTTGGATTAGACAATGCCGGAA 17852586 Query 47286 AAACGGCATTACTCCACATGCTCAAA 47311 |||| ||||| | |||||||| ||| Sbjct 17852587 AAACAACATTATTGCACATGCTTAAA 17852612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397432322552440