Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4867 107 2e-18 seq4869 82.4 6e-11 >seq4867 Length=22528368 Score = 107 bits (118), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 27010 cATAATTATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATAT 27069 |||| | |||||| || || | |||| || | ||| | || || || || || || | Sbjct 1269238 CATATTAATTGCCCCCACGGAGACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGT 1269179 Query 27070 TGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTT 27129 |||||||| || |||| | ||||| ||||||||||||||| | || |||||||| | Sbjct 1269178 TGTAGTCGGACAGCGTGCGTCCATCTTCCAGCTGTTTACCGGCGAAGATCAGACGCTGCT 1269119 Query 27130 GATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG 27189 | || || || | || || || || ||||||| || | | | || | ||||| Sbjct 1269118 GGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCAC 1269059 Query 27190 TGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | | ||| || || ||||| || | ||||| ||||| || || || ||||| |||||| Sbjct 1269058 TTGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCATA 1269000 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| | || || || || || || ||||||||| || |||| | ||||| Sbjct 1268981 ACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTCC 1268922 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||||||||||||| | || |||||||| || || || || | || || || || | Sbjct 1268921 AACTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 1268862 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||| ||| ||||| || ||||| || | ||| Sbjct 1268861 ATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTCTTG 1268802 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || ||||||||||| ||||| Sbjct 1268801 CCAGTCAGCGTCTTCACAAAGATCTGCAT 1268773 >seq4869 Length=19992947 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 131645 TCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTT 131704 || |||| |||||| |||| ||| || | ||| | ||||| ||||||||||||||| | Sbjct 3229203 TCCACTCTCTTCATGAACAGATCAGGAATCCAGAGGGCGTAAAACAGATCTCTAGCTCTC 3229262 Query 131705 TTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAG 131764 | || ||| | || || | ||||| | | || ||||| |||||||| ||||||| Sbjct 3229263 TGTTCCTCTTTTCCAGTATTCTTTTTGAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAG 3229322 Query 131765 GGTTCCAAATACA 131777 || |||| |||| Sbjct 3229323 GGCTCCAGGTACA 3229335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424909085595456