Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4878 89.7 6e-13 seq4869 87.8 2e-12 >seq4878 Length=25969111 Score = 89.7 bits (98), Expect = 6e-13 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 |||||||| ||| ||||||||||||||||| ||||| || || | ||||||||||||| Sbjct 11651510 GCTTTTGC-TGCAGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCTTCTATTTTCTGGCT 11651568 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||| | || |||||||| || || | |||||||| || || || Sbjct 11651569 AAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTCAT 11651616 >seq4869 Length=19992947 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || |||||||||| ||| || ||||||||||| | ||||| |||||||||||| | Sbjct 3228341 ATCTCTGTGCACAGGTTACTGGATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGG 3228400 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || |||||||||||||| |||||| || || || ||||| Sbjct 3228401 TTGCAGGCGTCCTTGTAAAGCATGTAGGGTGTGCCAGTCTC 3228441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548491285134720