Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq4867 102 7e-17 seq4888 87.8 1e-12 >seq4867 Length=22528368 Score = 102 bits (112), Expect = 7e-17 Identities = 124/168 (74%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| |||| || ||||| || ||||||||||| || || ||||| || |||||||| Sbjct 19258924 CATGTCATTGTATTCAGCTCCAAAGTGCCTCCACTGAAAGCCATACACTGGGCCCAGGTC 19258865 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||| || || | | ||||| | || |||| ||| || ||||| || || || || Sbjct 19258864 TCCTTCCTCACGATCAGTAAAGCCATTTTTATCCAGAAACTCCCTGGAGCCATTAGCATC 19258805 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| | ||| || || | || |||||||||| ||||| || || Sbjct 19258804 CCAGAT-TCTACACCGTTTTGTGACAGCTCTTTGGCATTTGTTGAACC 19258758 >seq4888 Length=31417778 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || ||||| |||||||| |||| ||| ||||||| | || ||||| || | | | || Sbjct 2609042 TTGAGCTCTCTGCTGAGAACTATGTTGATCCTGTTCTTTAGGGGTCTGTTTTGTGCAGGA 2609101 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 || ||||||||||||||||| ||||| || ||||| |||| || ||| Sbjct 2609102 ATAGAGAACCAAGTCTTTCTGCCCATGATGACCACATTCTTTTTACCT 2609149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406286195073696