Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4867 107 1e-18 >seq4867 Length=22528368 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | ||||| |||||| ||| |||||| || ||||| || || || Sbjct 1268999 CCACCTCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1268940 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| | ||||||||||| || || | |||||| ||||| || || Sbjct 1268939 AGTGTGCGTCCATCTTCCAACTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGA 1268880 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||| || | || || | ||| ||||| | ||| || Sbjct 1268879 ATGCCTTCCTTGTCCTGGATC-TTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAAC 1268821 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | || || || || || || | ||| |||||||| |||||||| || Sbjct 1268820 CTCAAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 1268770 Score = 89.7 bits (98), Expect = 3e-13 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | |||||| ||| |||||| || ||||| || || || || || || Sbjct 1269218 AGACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGT 1269159 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || ||||||||||| || || | |||||| ||||| || || | || ||| Sbjct 1269158 CCATCTTCCAGCTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCC 1269099 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| |||| || | || ||| | ||| ||||| | | | ||||| || | | Sbjct 1269098 TTGTCCTGGATC-TTGGCCTTGACGTTCTCAATGGTGTCACTTGGT-TCCACCTCAAGAG 1269041 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || | || || || || |||||||| Sbjct 1269040 TGATGGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 1269001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314710850770904