Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4869 122 8e-23 >seq4869 Length=19992947 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | || || ||||| || || || Sbjct 16670325 ATGCAGATCTTTGTCAAGACCCTAACTGGTAAGACCATCACCCTTGAGGTCGAGCCAAGT 16670384 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || |||||||||||||| || || || || Sbjct 16670385 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 16670444 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || |||||||| ||||||| | || | ||||| |||||| Sbjct 16670445 CAGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGACGCACACTGTCCGACTACAAC 16670504 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| ||||| ||| |||| ||||| | |||| ||||| Sbjct 16670505 ATTCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGGGGAGGCAT 16670554 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| |||||| | || || || || || || || Sbjct 16670552 CATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAG 16670611 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| ||||| ||| || || |||||||||||||| || || || || Sbjct 16670612 CGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCA 16670671 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || |||||||| ||||||| | || | ||||| ||||| Sbjct 16670672 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGACGCACACTGTCCGACTACAA 16670731 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 ||| || || ||||| ||||| ||| |||| ||||| Sbjct 16670732 CATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGT 16670768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434891826485760