Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq4869 87.8 1e-12 >seq4869 Length=19992947 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| |||| || ||||| || ||||| |||| Sbjct 16670418 GACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCTGGCAAACAGCTGGAA 16670477 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| ||||||| |||||||| || |||||| ||| |||||| |||| || Sbjct 16670478 GATGGACGCACACTGTCCGACTACAACATTCAGAAAGAGTCCACCTTGCATCTGGTGCTG 16670537 Query 28003 CGT 28005 ||| Sbjct 16670538 CGT 16670540 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| || | || ||||| || ||||| |||| Sbjct 16670646 GACAAAGAAGGCATTCCCCCTGACCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAA 16670705 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| ||||||| ||||||||||| |||||| ||| |||||| |||| || Sbjct 16670706 GATGGACGCACACTGTCCGACTACAACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTG 16670765 Query 28003 CGT 28005 ||| Sbjct 16670766 CGT 16670768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355841200387176