Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4867 179 9e-40 seq4869 150 4e-31 >seq4867 Length=22528368 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | || || | ||||||| Sbjct 1269212 AGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCT 1269153 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || || |||||||| || || || ||||||||||||| |||||||||||| Sbjct 1269152 TCCAGCTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 1269093 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || ||||||||| ||| ||||| |||||||| ||| Sbjct 1269092 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTC 1269033 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || |||||||| || | |||||| Sbjct 1269032 TTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 1269001 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| || |||||||| || || | || || | ||||||| Sbjct 1268984 AGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCT 1268925 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || |||||||| || || || ||||||||||||| |||||||||||| Sbjct 1268924 TCCAACTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 1268865 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || |||||||| | |||||||| |||||||| ||| Sbjct 1268864 TGGATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGAGTGATGGTC 1268805 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | |||||| || Sbjct 1268804 TTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 1268770 >seq4869 Length=19992947 Score = 150 bits (166), Expect = 4e-31 Identities = 154/200 (77%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||||||||| |||||||| || || | || || | ||||||||||||||| ||||| Sbjct 16670749 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTCCAGCTGTTTGCCA 16670690 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| || | || |||||||| |||| ||||| ||||||||||||||| || Sbjct 16670689 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTTGCCTTG 16670630 Query 211038 ACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || |||||||| |||| || |||||||| ||||| ||||| || || | Sbjct 16670629 ACATTCTCAATGGTGTC---GCTTGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTCAAG 16670573 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 16670572 GTCTTGACGAAGATCTGCAT 16670553 Score = 145 bits (160), Expect = 2e-29 Identities = 153/200 (77%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||||||||| || ||||| || || | || || | ||||||||||||||| ||||| Sbjct 16670521 GTGGACTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGTCCATCTTCCAGCTGTTTGCCA 16670462 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | | || |||||||| |||| ||||| |||||||||||||| ||| Sbjct 16670461 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTC 16670402 Query 211038 ACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || ||||||||| ||| || ||||| || ||||| ||||| || || || Sbjct 16670401 ACATTCTCAATGGTGTCA---CTTGGCTCGACCTCAAGGGTGATGGTCTTACCAGTTAGG 16670345 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| ||||| | |||||| Sbjct 16670344 GTCTTGACAAAGATCTGCAT 16670325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159079405208120