Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4867 122 7e-23 seq4869 107 2e-18 >seq4867 Length=22528368 Score = 122 bits (134), Expect = 7e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | ||| | ||||| ||| || ||| ||| || || || || || |||| Sbjct 1268999 CCACCTCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1268940 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| ||| | || || | |||||| || || || || |||||||||||||| | || Sbjct 1268939 AGTGTGCGTCCATCTTCCAACTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGA 1268880 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || |||||| ||| || |||| || | | || ||||| | ||| || Sbjct 1268879 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACC 1268820 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGC 39292 || | ||||| | || || |||||||| || |||||||| ||||||||||||| Sbjct 1268819 TCAAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTTTACGC 1268765 >seq4869 Length=19992947 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | ||||| ||| | ||| |||||| || || || || |||| Sbjct 16670779 CCTCCTCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 16670720 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| ||| | || || ||||||||||| ||||| || || | ||||||||| | ||| Sbjct 16670719 AGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 16670660 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||||||||| ||| || |||| || | | || ||||| | ||| || Sbjct 16670659 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTTGGCTCGACC 16670600 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| | || || |||| || || || ||||| ||||| Sbjct 16670599 TCGAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 16670553 Score = 102 bits (112), Expect = 7e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||||| ||| | ||| |||||| || || || || || Sbjct 16670555 CATGCCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGAATGTTGTAGTC 16670496 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || ||||| ||| | || || ||||||||||| ||||| || | | ||||||||| | Sbjct 16670495 GGACAGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGG 16670436 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||||||||| ||| || || | || | | || || || | ||| Sbjct 16670435 GGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTC 16670376 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || || | ||||| | || || || || || || |||||||| ||||||| || Sbjct 16670375 GACCTCAAGGGTGATGGTCTTACCAGTTAGGGTCTTGACAAAGATCTGCATCTGTA 16670320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429520010894744