Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4869 111 1e-19 >seq4869 Length=19992947 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| ||||| || || | | Sbjct 16670553 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAGC 16670612 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | ||||||||||| | || || || || Sbjct 16670613 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAGGACAAAGAAGGCATTCCCCCTGACCA 16670671 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| |||||||| |||||||| | |||||| | ||| ||||| Sbjct 16670672 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGACGCACACTGTCCGACTACAA 16670731 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAG 23842 ||| || ||||||||||| || ||| | || | | | ||||||| |||| Sbjct 16670732 CATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGAGGAGGTTCAG 16670784 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| || || || || | | Sbjct 16670325 ATGCAGATCTTTGTCAAGACCCTAACTGGTAAGACCATCACCCTTGAGGTCGAGCCAAGT 16670384 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||||||||| | || || || || Sbjct 16670385 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAAGAAGGCATTCCCCCTGACCA 16670443 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| |||||||| |||||||| | |||||| | ||| ||||| Sbjct 16670444 GCAGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGACGCACACTGTCCGACTACAA 16670503 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 ||| || ||||||||||| || ||| Sbjct 16670504 CATTCAGAAAGAGTCCACCTTGCAT 16670528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337989463923104