Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq898 131 1e-25 seq4888 87.8 1e-12 seq4867 84.2 2e-11 >seq898 Length=903892 Score = 131 bits (144), Expect = 1e-25 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||| ||||| || ||| Sbjct 822010 AGTCCAGTGATGTGGGCAATCATGTAGGTGAGTAGTGCGTAGCTGGCAATGTTGAATGGC 821951 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || || | |||||| ||||||||||| | ||| ||||| | Sbjct 821950 ACACCCAGACCCATGTCACCAGAGCGCTGGTACAGCTGGCACGACAACTCACCGTCTGAC 821891 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || |||||||| || | |||||||| || || | |||||| || Sbjct 821890 ACATAAAACTGGCATAACGCATGGCAGGGGGGCAATGCCATGCGA 821846 >seq4888 Length=31417778 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || ||||| |||||||| |||| ||| | ||||| | || ||||| || | | | || Sbjct 2609042 TTGAGCTCTCTGCTGAGAACTATGTTGATCCTGTTCTTTAGGGGTCTGTTTTGTGCAGGA 2609101 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 || ||||||||||||||||| ||||| || ||||| |||| |||||| Sbjct 2609102 ATAGAGAACCAAGTCTTTCTGCCCATGATGACCACATTCTTTTTACCT 2609149 >seq4867 Length=22528368 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || ||||||||||| || || ||||| || ||||||||||| || || | | ||| Sbjct 19258902 AAGTGCCTCCACTGAAAGCCATACACTGGGCCCAGGTCTCCTTCCTCACGATCAGTAAAG 19258843 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || | || |||| ||| || ||||| || || || |||||||| | ||| || || | Sbjct 19258842 CCATTTTTATCCAGAAACTCCCTGGAGCCATTAGCATCCCAGAT-TCTACACCGTTTTGT 19258784 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || |||||||||| ||||| || || Sbjct 19258783 GACAGCTCTTTGGCATTTGTTGAACC 19258758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406139003842768