Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq255 105 6e-18 seq4878 98.7 8e-16 >seq255 Length=1984256 Score = 105 bits (116), Expect = 6e-18 Identities = 104/133 (78%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 4567 AACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626 ||||| | |||||||| || ||||| || || | || | ||||||||| | |||||| | Sbjct 640789 AACCT-CATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGACCTCTTT 640847 Query 4627 TTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 | || | ||| | || || |||||||| ||||| ||||| |||||||| || || |||| Sbjct 640848 TCTTCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACCGCAGCAA 640907 Query 4687 ACGCTACTAATCG 4699 | ||||||||||| Sbjct 640908 AAGCTACTAATCG 640920 >seq4878 Length=25969111 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||||||| || ||||| || || || || | ||| ||||| | |||||||| || Sbjct 11651628 TCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 11651569 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || |||| ||||| |||||||||||||| || ||||| || || ||||| || Sbjct 11651568 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAGCC 11651509 Query 4692 AC 4693 || Sbjct 11651508 AC 11651507 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 4836 AGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTA 4895 ||||| ||||||||||| || || ||||| || || ||||| || ||||| ||||||| Sbjct 11651042 AGGCTGTACATTTCAGAGTGAATGTTTTCCATTGCGATCTGGAAACCGTAGAAGCATCGG 11650983 Query 4896 GCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 |||||||| ||||| ||||| | | ||||| Sbjct 11650982 GCTTCTGTCACTTGGACTTCCTGAGTAAATC 11650952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427024159587704