Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4878 107 3e-18 seq4869 98.7 1e-15 >seq4878 Length=25969111 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| || || || ||||| |||||||| ||||| | ||| || Sbjct 11651628 TCATCTCTGCTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 11651569 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || |||| || ||||| ||||||||||| || ||||| || || || || || Sbjct 11651568 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAGCC 11651509 Query 46774 ACAAGTCTCTCTCC 46787 || | ||||||||| Sbjct 11651508 ACCACTCTCTCTCC 11651495 >seq4869 Length=19992947 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 76604 ttCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCA 76663 ||||| || |||||||| ||||| || || ||| ||||||| | ||| |||| || Sbjct 3229212 TTCATGAACAGATCAGGAATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGTTCCTCT 3229271 Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 ||||| ||||||||||| || |||||||| || | ||| ||| ||||||| || || || Sbjct 3229272 TTTCCAGTATTCTTTTTGAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAGGGCTCCAGG 3229331 Query 76724 TATATCGCCATAACACCCGGTC 76745 || || || | | | || |||| Sbjct 3229332 TACATGGCAAAAGCTCCTGGTC 3229353 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || |||||||| | ||||||||| |||||||||||||| || ||||| || || ||| Sbjct 3229915 GTGCCAGCATTAAAGAGTGTAGGAGAAGCATGAGTGAACCACTTCTCAGACAGCAGGTTG 3229974 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||||||| | ||| | || ||| | ||| || || || | || | ||||| | Sbjct 3229975 TAGGTTTCAATAGCGGCTGCAATGTCCTCCTTATGGATGCCCACGGACACTCTCATCAGC 3230034 Query 77114 ATATGCTGAGGTCGTTC 77130 || ||||| || || || Sbjct 3230035 ATGTGCTGTGGGCGCTC 3230051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712890839708160