Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4867 132 1e-25 seq4869 114 3e-20 >seq4867 Length=22528368 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || ||||| || || ||||| || ||||||||||| |||| | || Sbjct 1268993 CTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTG 1268934 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| | ||| ||||||||||| || | ||||||||| | | || ||| Sbjct 1268933 CGTCCATCTTCCAACTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCT 1268874 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || |||||| |||| | | |||| ||| || |||||| Sbjct 1268873 TCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGA 1268814 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT-TTTACCCT 152112 || || || ||||| || || |||||||| |||| |||||| ||||| || Sbjct 1268813 GTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTTTACGCT 1268764 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 1269212 AGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCT 1269153 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||||||||| || | ||||||||| | | || |||||||| || Sbjct 1269152 TCCAGCTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 1269093 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||| |||| | | |||| ||| || || |||||||| || Sbjct 1269092 TGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTTGGTTCCACCTCAAGAGTGATG 1269036 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||| ||||||| |||||| Sbjct 1269035 GTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 1269001 >seq4869 Length=19992947 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | || || ||||| | || |||||||| ||||||||||| |||| | || Sbjct 16670773 CTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGTGTG 16670714 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || ||| || || ||||| |||||||||||||| | | || ||| Sbjct 16670713 CGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCT 16670654 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || || || ||| |||||| |||| | | |||| ||| || || || Sbjct 16670653 TCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTTGGCTCGACCTCGAGG 16670594 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || | ||||| ||||||| |||||| Sbjct 16670593 GTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 16670553 Score = 100 bits (110), Expect = 7e-16 Identities = 158/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || ||||| | || |||||||| || |||||||| |||| | || Sbjct 16670546 CCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGACAGTGT 16670487 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| || || ||||| | |||||||||||| | | || || Sbjct 16670486 GCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCC 16670427 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || || || || || ||| |||| | | |||| ||| ||| || || Sbjct 16670426 TTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTTGGCTCGACCTC 16670370 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || || || || || ||||| || |||| |||||| Sbjct 16670369 AAGGGTGATGGTCTTACCAGTTAGGGTCTTGACAAAGATCTGCAT 16670325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153748539087848