Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4867 132 3e-26 seq4869 113 3e-20 >seq4867 Length=22528368 Score = 132 bits (146), Expect = 3e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | |||||| || || ||| |||||| ||||||||||| || Sbjct 1269003 CATACCACCTCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1268944 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || |||| ||| || ||||| ||||||| ||||||||| || | Sbjct 1268943 GGACAGTGTGCGTCCATCTTCCAACTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGG 1268884 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| ||||| ||| | | | ||||||||| || || Sbjct 1268883 AGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTC 1268824 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| || || || |||||||| ||||| ||||| Sbjct 1268823 AACCTCAAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1268773 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 ||||| | || | || || || || || ||| |||||| ||||||||||| |||| Sbjct 1269227 CCCCCACGGAGACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1269168 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || |||||||| || ||||| ||||||| ||||||||| || | ||| Sbjct 1269167 AGCGTGCGTCCATCTTCCAGCTGTTTACCGGCGAAGATCAGACGCTGCTGGTCAGGAGGA 1269108 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||||| ||| ||||| || | | |||| | |||||||| | |||||| Sbjct 1269107 ATGCCTTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCAC 1269049 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| | || || ||||| || || |||||||| |||||||| ||||| Sbjct 1269048 CTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTACGAAGATCTGCAT 1269001 >seq4869 Length=19992947 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||| || | || |||||| || | ||| ||| || ||||||||||| |||| Sbjct 16670779 CCTCCTCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 16670720 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 ||| ||| | || |||||||| || || |||||||||| | |||||| || | || Sbjct 16670719 AGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 16670660 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | ||||| || ||| ||||| ||| | | ||| | ||||||||| | || || Sbjct 16670659 ATGCCTTCTTTGTCCTGGATCTT-TGCCTTGACATTCTCAATGGTGTCGCTTGGCTCGAC 16670601 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| | || || ||||| || || | |||||| |||||||| |||||| Sbjct 16670600 CTCGAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATG 16670552 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || |||||| || | ||| ||| || || |||||||| || Sbjct 16670555 CATGCCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGAATGTTGTAGTC 16670496 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || |||||||| || || ||||||||||| | |||||| || | Sbjct 16670495 GGACAGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGG 16670436 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||| || ||| ||||| ||||| | | |||||||| | || Sbjct 16670435 GGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTC 16670376 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| || || |||||||| || ||||| ||||| Sbjct 16670375 GACCTCAAGGGTGATGGTCTTACCAGTTAGGGTCTTGACAAAGATCTGCAT 16670325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359968954471896