Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq4883 140 5e-28 seq4872 125 1e-23 seq4888 104 3e-17 >seq4883 Length=37168685 Score = 140 bits (154), Expect = 5e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || |||| |||||| || | |||||| ||||| ||||||| ||| || ||||| || Sbjct 35762989 CCAATAAGGATGAGCCGTGCGGTCTGAAACAGCCTCTCGTCATCCCAGTCAGGATGCTCC 35763048 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 || || | | ||| ||||| | ||||||||| | |||||||| ||||| ||||||||| Sbjct 35763049 TGCTTTAATATATCACACACTCGGTTGTGTTCTCGCAGCCAGATGGTGGCATACATCATG 35763108 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACT 9414 || ||||| ||||| ||||| ||||| ||||| ||||| | ||| | || || | Sbjct 35763109 AGTCCAGGAACCAGTCCAAAGGCCTCGTGACCCACAGCAAAACGTCGGGACTCAGGTATA 35763168 Query 9415 TCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCG 9474 | ||||| ||| ||||| || || || || |||| | || ||||| | ||||| Sbjct 35763169 TGAGGAGGGTAGTGCATGTCTACTTGAACCTCACTGACTGTCGGAGGATAAACCTCACCA 35763228 Query 9475 TC 9476 || Sbjct 35763229 TC 35763230 Score = 132 bits (146), Expect = 7e-26 Identities = 196/278 (71%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 8308 CCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCC 8367 ||| ||||| || | || || | | ||| | || || | |||| ||| | || || Sbjct 35761765 CCCTTTGACATTATTGCAAACCAAATTCTGCAGAGAGGCAGTGTTGATAATCTCAAAGCC 35761824 Query 8368 CACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCAT 8427 ||| | || || || ||||| || ||||||||| | ||||| || ||| || |||| Sbjct 35761825 CACTTTGCCACCAAATGTGCTTGGTTTCCAGTACTCAGGGGAACAAATGGGATTACCCAT 35761884 Query 8428 GAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTT 8487 || |||||||| ||| | || || |||| ||| | ||| |||| || || ||||| || Sbjct 35761885 AAGTCCTTTGAGTGAGTAGGGGGCACCCATCTCCACCATGGTCTCCCCAAAAATGGCATT 35761944 Query 8488 GGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547 | | | ||| || || |||| | || || || ||||||||||| || || |||||||| Sbjct 35761945 GAGCCTGGGTTTCTCAACCAGCAGACCCGTATAAAGCTCCACAGCGTCTACATCTCCGTA 35762004 Query 8548 AAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | | ||||| ||||| || ||||||||||||| Sbjct 35762005 CATCTCTTCAAGTTCAGCAGCCATTTCCTTTTCTCCTG 35762042 Score = 89.7 bits (98), Expect = 7e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| ||| || | || ||||| ||||| | | || ||||| || | | | | Sbjct 35764000 TCACCTGCGACTCCCATTGGTGTTGGGCAATCATTCGCGACAGGAGGCAGCGTACGAGTG 35764059 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || |||||||||||||| | |||||||||||| ||| | ||||| || ||| || | Sbjct 35764060 TAGTAGGAGAGATTGGAATAGGCTTCCCAGCTTTTGTAACCATAGTCAGCATTGAATGTA 35764119 Query 10028 GGAGGGCTGTCAATCAAATCGG 10049 || |||||||||||||||| || Sbjct 35764120 GGGGGGCTGTCAATCAAATGGG 35764141 >seq4872 Length=27116566 Score = 125 bits (138), Expect = 1e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || || ||||||||| ||||||| | || || || || | || ||||||||||| Sbjct 3677641 CCACCAAATGTGCTGGGCATCCAGTATTCAGGAGAACAAATAGCATTTCCCATGAGGCCT 3677700 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 ||||||||| | || || |||| ||| | ||| ||||| || || | || ||||| | Sbjct 3677701 TTGAGGGAGTAGGGGGCTCCCATCTCCACAATACTCTCCCCAAATACAGCATTGGGTCTA 3677760 Query 8495 GGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGC 8553 || || |||| |||||| || | |||||||| || || || | || ||||| || Sbjct 3677761 GGTTTCTCCA-CAAGAAGGCCAGGATACAGCTCAACCGCATCTATGTGACCGTACAGCTT 3677819 Query 8554 CCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGTTTTATTAATaaaaaa 8601 | | |||||| | || | |||||| |||||||||||| || ||||| Sbjct 3677820 CTTCAGTTCGTCTGCCAGCTCCTTGTCTCCTGTTTTACCAAACAAAAA 3677867 >seq4888 Length=31417778 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || |||||||| || | | ||||| ||||| ||||| || | ||| ||||||||| Sbjct 726482 CCTATAATGATTAGCCTGGCAGTCTGAAACAGCTGCTCATCCCCCCAGGTCGGATGTTCT 726423 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 |||||||| | ||| ||||| | |||||| || | ||||| | ||||||||||| || Sbjct 726422 TGTTTCAGGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACATACTG 726363 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 || || || | ||| ||||| ||||||| || | |||| Sbjct 726362 AGACCCGGCAGCAGTCCAAACACCTCTTGCCCAATGGCCA 726323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716832998827520