Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4867 165 2e-35 seq4869 158 3e-33 >seq4867 Length=22528368 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||| || ||||||||| ||| Sbjct 1269004 CAGATCTTCGTAAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGTGAC 1269063 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| ||||| || ||||| |||||||| Sbjct 1269064 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAG 1269123 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| |||||||| ||||||||| | || || |||| || ||| || Sbjct 1269124 CGTCTGATCTTCGCCGGTAAACAGCTGGAAGATGGACGCACGCTGTCCGACTACAACATC 1269183 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || ||||||||| || | ||| Sbjct 1269184 CAGAAGGAGTCCACCCTCCATCTTGTTCTGCGTCTC 1269219 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || ||||| || ||||| || || ||| Sbjct 1268776 CAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACTCTTGAGGTTGA--GCCCAGCG 1268833 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| |||||||| ||||| || ||||| ||||||| Sbjct 1268834 ACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGC 1268893 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| |||||| | ||||||||| | || || |||| || ||| Sbjct 1268894 AGCGTCTGATCTTCGCCGGTAAACAGTTGGAAGATGGACGCACACTGTCCGACTACAACA 1268953 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || || ||||| || | | |||||| Sbjct 1268954 TCCAGAAGGAGTCCACCCTCCATCTGGTGCTCCGCCTCAGA 1268994 >seq4869 Length=19992947 Score = 158 bits (174), Expect = 3e-33 Identities = 169/222 (76%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || ||||| || || | ||||| || || |||||||||||||| || |||| Sbjct 16670556 CAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAGC--- 16670612 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| ||||| ||||| |||||| |||||||||||||| || || || |||||| Sbjct 16670613 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 16670672 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||| || || |||||||| ||||||||| | || || |||| || ||| Sbjct 16670673 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGACGCACACTGTCCGACTACAAC 16670732 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||||| || || | |||||| Sbjct 16670733 ATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGA 16670774 Score = 125 bits (138), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || || || || || || |||||||| ||||| || || || Sbjct 16670328 CAGATCTTTGTCAAGACCCTAACTGGTAAGACCATCACCCTTGAGGTCGA--GCCAAGTG 16670385 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||||||||| || || || ||||||| Sbjct 16670386 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGC 16670445 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || |||||||| ||||||||| | || || |||| || ||| Sbjct 16670446 AGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGACGCACACTGTCCGACTACAACA 16670505 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 | || ||||| || || ||||||| || || | ||||| Sbjct 16670506 TTCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAG 16670545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203655813324272