Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4239 563 1e-155 seq1161 84.2 3e-11 >seq4239 Length=33969 Score = 563 bits (624), Expect = 1e-155 Identities = 1298/1945 (67%), Gaps = 25/1945 (1%) Strand=Plus/Plus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| ||||| || |||| | ||||| || | || | || ||||| ||||| Sbjct 29864 TTCTTCATCTCCTCGCTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGTGGATTC 29923 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | ||||| |||||||| | || || || ||||| || || ||||| || | ||| Sbjct 29924 ACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCTTCA 29983 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | ||||||||| || |||| || || || || || || || ||||| || |||| || Sbjct 29984 ATAGACTCATTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 30043 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-AGGTTCCCAATTCCAA-A 53324 | ||| || || | |||| | || || || || || || |||| | |||| | Sbjct 30044 AGACTGTTCCTCACGCCGTGCTTGGCAATCTTCTCCTTCAGCAGCTTCC--AGTCCAGCA 30101 Query 53325 GATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATC 53384 | || | ||| || || || ||||| ||| || || | Sbjct 30102 GGTCGGTGGGTGTCTTCTCCCACATGTCGTACTGGAGGATGCCGTTGCTGACGGGAGAGC 30161 Query 53385 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 53444 || | || || || || || || || | || || || || || ||||| | || Sbjct 30162 CTTCGTACGTCTCATAGGGGCCAAGCTCAGCCGCCAGCTCGCAGCTTGCCTCCAGGGCGG 30221 Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 |||| || ||||| || ||||||| | || || || || || |||| || || | Sbjct 30222 CGTAGTAGATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTCGAACG 30281 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 | ||| | ||| || || || || || || || || ||||| || || || || || | Sbjct 30282 GGTAACGCATGAGGATGAAGGCATCGGCCAAACCCTGGACACCGATTCCTATTGGCCTGT 30341 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 | | ||| || || |||| ||||| || | ||||| | ||||| || || || || | Sbjct 30342 GACGCTTGTTGGACTTTTCTGCTTCAGGCACTGGATAGAAGTTAATCTCAATTATCTTGT 30401 Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---TGTC 53681 | | |||| |||| ||||||||| ||||| | ||||| ||| ||||| || Sbjct 30402 TTAAGTTTTTGACTATTACTTTGGTCACATACGCTAGTTTCTTAAAGTCAAAAGTCTGCT 30461 Query 53682 CATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT--T 53739 || | || ||||||| | |||||| || ||||||||||| || || ||||||| | Sbjct 30462 CAGGGGTGACGTACATGTTGAGTGCAATGGAGGCCAGATTACAGACAGCCACCTCATCGT 30521 Query 53740 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 53799 || | |||| || || || ||||| || || || | ||||||||| |||| ||| Sbjct 30522 GGC--TGGTGTATTCAATGATTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCTAGATT 30579 Query 53800 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTC 53859 || || || ||||| |||| ||||| ||||| || || ||| |||||||||| ||||| Sbjct 30580 CTGCTGGTTGCTCTTCCTGTTGCACGCGTCCTTGTACAGCATGTATGGCGTACCGGTTTC 30639 Query 53860 AATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCT 53919 ||||||| || ||||| || | ||| | ||||||| | | ||| || Sbjct 30640 TGTCTGGGACTCGATAATGGCGTGCCACAGCTGCTGAGCCTTCACCAAGCGCTTGACCCT 30699 Query 53920 CTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAA 53979 | || | || ||| ||||| | |||||||| || ||||| | ||||| Sbjct 30700 CCCCTCCTTCTCATATGTGGTATAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAG 30759 Query 53980 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT--CACTCGTTTC 54037 || || || ||| |||||||||| ||||| ||| || | ||| ||||| ||| Sbjct 30760 CCCCGGGCACTCACTTGGACACATCAGAGACCAGTCTTGGT--TGCTTTCCACTCTCTTC 30817 Query 54038 ATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTT 54096 || || || || || ||||| | || || ||| |||||||||| ||| || ||||| || Sbjct 30818 ATGAACAGGTCGGGGATCCACATGGCGTAGAAA-AGATCTCTGGCTCTCTGCTCCTCCTT 30876 Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 |||||| ||||| || || || ||||| | | | |||| | ||||| || |||| ||| Sbjct 30877 TCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTA 30936 Query 54157 TATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 54216 |||| | |||| |||| ||||| || ||||| || | || | || ||||| || Sbjct 30937 CATGGCAAAGGCTCCGGGCCTCTTGTTGCCACCCTGGTCGACATAACGTGCTGTGTTGTT 30996 Query 54217 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 54276 ||||||||||| ||| || | | |||||||| || || || || | ||| ||||| Sbjct 30997 ATAAACTCTCAGCATGGGGACTAGCCCATTGGAGTTGCCGTTTGTGCCAGCGATGTAGCT 31056 Query 54277 TCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAA 54336 || | | | || || | | | || || || || || || ||||| | Sbjct 31057 CCCCGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCTGCCTTGGAGATGAG 31116 Query 54337 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 54396 || ||| | || | ||| ||||| ||||| || || || || || ||||| || || Sbjct 31117 GGCACATTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAG 31176 Query 54397 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 54456 || ||||| |||| || | | | ||||| || || || | ||||| || ||||| Sbjct 31177 GAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTG 31236 Query 54457 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTG 54516 || ||||| || || || | || ||||| |||||||| |||| ||| |||||| || Sbjct 31237 GGTGAACCACTTCTCTGACAACAGGTTGTAGGTCTCGATGGCTGCGTCGATATCCGTTTT 31296 Query 54517 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 54576 || || || || || || | ||| | ||||||||| || | || | | ||| || Sbjct 31297 GTGGATCCCAACAGCCACTCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCATT 31356 Query 54577 TATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 54636 || |||| || |||||| |||| || || || ||||| ||||||| | || || Sbjct 31357 GATCTTCAACAGGTAGGACCGCTCCAGCGTCTTGAAGCCAAAGAAGTTGTAGGCGAAATC 31416 Query 54637 TCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGT 54696 ||| ||| |||| || | |||||||| || |||| | ||| | || | || Sbjct 31417 TCGGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTATTCTCAAGAACAATGTCGAGCGT 31476 Query 54697 AATACTT-GAAATAATCGGAGAAT---GTTTCCCATTTTTAGGATTGACATAGTTAAATA 54752 | ||| || || || ||||| | |||| |||| || ||||| ||||| || | Sbjct 31477 -CTCCTTGGAGATCATGGGAGAGTGGCGTTT---ATTTAAGGGGTTGACGTAGTTGAACA 31532 Query 54753 AATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTA 54812 |||| |||||| ||||| || | || || || |||||||| || ||||| ||||| | Sbjct 31533 GGTCCTCCATCACATCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGA 31592 Query 54813 TTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGG 54872 | | ||||| || |||||||| || || |||| || || |||||| || || || | Sbjct 31593 TGCGCGCGGCGAGGATGGCATAGTCGGGGTGTTTAGTGGTGAGAGTGGCGGCGATCTCTG 31652 Query 54873 CTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCA 54932 ||| ||| ||||| | || || || || |||||| | || | || ||||| ||||||| Sbjct 31653 CTGCCAGTGTGTCGAGCTCCACGGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCA 31712 Query 54933 TAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATAC 54992 | | || | ||||| | | |||| ||| | ||| || || | || || | Sbjct 31713 TCGTAATCTGGGCCGGATCCACAAAGTCAGAGTTCAGGCCGTAGCACAGCTTCTGGATGC 31772 Query 54993 GAGATGTGATTTTATCAAACATGAC 55017 |||| ||||||||||| |||||||| Sbjct 31773 GAGAGGTGATTTTATCGAACATGAC 31797 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||| || || |||||| || |||| || || || ||||| | Sbjct 29039 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCAGCAATGTGGATGT 29098 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| || || || || ||||||||||| || | ||| || ||||| || | || |||| Sbjct 29099 TCAGGGACTGGCTCTGGTCGATGAAGGCACCGCGGTCGGCGGCCATCTTGAGTATGGTCT 29158 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | |||||||| | |||| | ||| | ||||| Sbjct 29159 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTGTGGAA 29209 >seq1161 Length=118247 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 |||||||||||||||||| || || ||||| | || | || || ||||||| || || Sbjct 53423 CACTCGTTTCATAAAGAGGTCTGGGATCCACATGGCGAAGAAAAGGTCTCTGGCCCTCTG 53364 Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 ||||| || ||||| ||||| || | || | ||| | | | ||| ||||||||||| Sbjct 53363 CTCCTCTTTACCTGTGTTCTTCTTCAACTCTAAGAAGTCAAACACATCGGAATGCCACGG 53304 Query 54148 TTCCAAGTA 54156 |||| ||| Sbjct 53303 CTCCAGGTA 53295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593586543179040