Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq112 104 2e-17 >seq112 Length=268450 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 |||| || |||||||| | || | || | |||||| || || || ||||||||||| Sbjct 20162 GTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCTATATTGAAAGGCACCCCC 20221 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 || ||||||||| | || | || || | |||||| || |||| ||||||||||| || Sbjct 20222 AGGCCCATATCACCCGAACGCTGGTACAGCTGACACGACAGCTCACCATCACACACGTAG 20281 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 ||||||| || | || |||||||||| ||||| Sbjct 20282 AACTGACACAGGGCGTGGCAGGGGGGCAGAGCCAT 20316 Score = 96.9 bits (106), Expect = 2e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 || || || ||||| |||||||| ||||| ||||| |||||||| ||||| ||||| ||| Sbjct 21407 TACTCGGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCCAGGTCGCCTTCCTCT 21466 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAAT 97517 |||||| ||| ||||| || || | || || || ||||| ||||||||||| Sbjct 21467 CTATCAGTGAAGCCAAGGTTGTCCAGGAAGTCCCGGGACCCATTGGCATCCCAAAT 21522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346707087426860