Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3162 120 3e-22 seq4239 102 7e-17 >seq3162 Length=48913 Score = 120 bits (132), Expect = 3e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| ||| | ||||| ||| || | Sbjct 2567 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCA 2508 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| ||||||||||| || ||||| ||||||||||| || | Sbjct 2507 GCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGA 2448 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || ||| || | ||| | |||||| || ||| ||||| | || | || |||| Sbjct 2447 TCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAAGTGATGGTCTTGC 2388 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || |||||||||||||| Sbjct 2387 CAGTCAGGGTCTTCACAAAAATCTGCAT 2360 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| ||| || ||||| || |||||||| ||| | ||||| ||| || Sbjct 2796 ACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 2737 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| ||||||||||| || ||||| ||||| ||||| || Sbjct 2736 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGG 2677 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||||| || ||| ||||| | ||| | || ||| Sbjct 2676 ATCTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTG 2617 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || ||||| || || ||||||||||||||| || Sbjct 2616 CCAGTCAGGGTCTTCACAAAAATCTGCATGCCT 2584 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||| | ||||| ||| || Sbjct 3024 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 2965 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| ||||||||||| || ||||| ||||| ||||| || Sbjct 2964 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGG 2905 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||||| | ||| ||||| | ||| | || ||| Sbjct 2904 ATCTTGGCCTTCACGTTCTCAATAGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTG 2845 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || ||||| || || || || ||||||||| || Sbjct 2844 CCAGTCAGGGTCTTCACGAAGATCTGCATGCCT 2812 >seq4239 Length=33969 Score = 102 bits (112), Expect = 7e-17 Identities = 300/452 (66%), Gaps = 9/452 (2%) Strand=Plus/Plus Query 133512 GCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTT 133570 |||||||||||||| ||||||| ||||| |||| ||||| || ||| ||||| ||| Sbjct 30194 GCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAAT-GTT 30252 Query 133571 GACGAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCC 133628 | | | ||| || ||| ||| ||| | | | | || | || | || || |||||| Sbjct 30253 CA-GCAGCTGAGCCTCGGGGCTTTCGAACGGG-TAACGCATGAGGATGAAGGCATCGGCC 30310 Query 133629 AAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCC 133688 |||||||| | |||| || || || | || || ||| | | || | || | | Sbjct 30311 AAACCCTGGACACCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTTTCTGCTTCAGGC 30370 Query 133689 GTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAA 133748 |||||| ||| | || || |||||||| | || ||| || | ||| |||| | Sbjct 30371 ACTGGATAGAAGTTAATCTCAATTATCTTGTTTAAGTTTTTGACTATTACTTTGGTCACA 30430 Query 133749 TGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCA 133808 | || | ||||||| |||| || | || |||| || |||||| ||| Sbjct 30431 TACGCTAGTTTCTTAAAGTCAAAAGTCT--GCTCAGGGGT-GACGTACATGTTGAGTGCA 30487 Query 133809 ATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCG 133868 || ||| |||||||| || ||| ||| | | | | || | | ||| || | | Sbjct 30488 ATGGAGGCCAGATTACAGACAGCCACCTCATCGTGGCTGGTGTATTCAATGATTTCTGTG 30547 Query 133869 CAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGA 133928 ||||||||||||| ||||||||||| | ||| | || ||||| | ||||| Sbjct 30548 CAGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCG 30607 Query 133929 TCCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960 |||||||| |||||||| ||| |||||||| Sbjct 30608 TCCTTGTACAGCATGTATGGCGTACCGGTTTC 30639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433734181569016