Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3162 114 1e-20 seq2793 100 3e-16 seq3928 98.7 1e-15 seq12627 96.9 4e-15 seq2507 96.9 4e-15 seq11366 93.3 5e-14 seq11055 93.3 5e-14 seq9773 93.3 5e-14 seq5808 93.3 5e-14 seq2899 91.5 2e-13 seq670 91.5 2e-13 seq403 91.5 2e-13 seq654 89.7 6e-13 seq4812 87.8 2e-12 seq13230 82.4 9e-11 seq12569 82.4 9e-11 >seq3162 Length=48913 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | ||| | ||| | ||| | ||| |||||| || || ||||| || | Sbjct 2586 CCTCCTCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2527 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| ||||| || || || ||||||||||| | || Sbjct 2526 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 2467 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||| ||| ||| || ||||| | | | ||||| || | || || Sbjct 2466 ATGCCCTCCTTATCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAACC 2407 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || | |||||||| ||||| || || ||||| ||||| || |||||||| || Sbjct 2406 TCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATTTTGAC 2354 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||| | |||| || | ||| |||||| || || ||||| || | Sbjct 3043 TCCTCCACGGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 2984 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || |||||||| ||||| || || || ||||||||||| | || Sbjct 2983 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGG 2924 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || ||||| ||| ||| || || | || | | ||||| || | || || Sbjct 2923 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATAGTGTCACTTGGCTCAAC 2864 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 2863 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2816 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||| | |||| || | |||| || || || || ||||| || | Sbjct 2814 CCTCCCCTCAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGAG 2755 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| ||||| || || || ||||||||||| | || Sbjct 2754 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 2695 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||| ||| ||| || || | || | | ||||| || | || || Sbjct 2694 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACC 2635 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| ||||| || || ||||| ||||| || ||||| Sbjct 2634 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 2588 >seq2793 Length=114742 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 49708 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 49767 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 49768 CTATACTAACGAGGA 49782 >seq3928 Length=41898 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 11339 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 11280 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 11279 TACTAACGAGGA 11268 >seq12627 Length=1423 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/80 (88%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 60059 AAAT-TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| ||||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct 417 AAATATTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACT 358 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||| |||||| Sbjct 357 GTCCACTATACTAACGAGGA 338 >seq2507 Length=60545 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 |||||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| || Sbjct 39874 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCC 39933 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 39934 ACTATACTAACGAGGA 39949 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 37030 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 37089 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 37090 TACTAACGAGGA 37101 >seq11366 Length=3798 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||| Sbjct 1784 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 1843 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 1844 TATACTAACGAGGA 1857 >seq11055 Length=4015 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||| Sbjct 3170 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 3111 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 3110 TATACTAACGAGGA 3097 >seq9773 Length=5142 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||| Sbjct 380 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 321 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 320 TATACTAACGAGGA 307 >seq5808 Length=40005 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||| Sbjct 37557 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 37498 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 37497 TATACTAACGAGGA 37484 >seq2899 Length=82969 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 82552 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 82611 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 82612 ATACTAACGAGGA 82624 >seq670 Length=181554 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||| ||||| ||||||||||||||||||||| | |||||||||| Sbjct 108423 TCTCCCCGTCGGGGAATCAAACCCCGGTCTCCCGCGTGACAGGCGGGGACACTCACCACT 108364 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 108363 ATACTAACGAGGA 108351 >seq403 Length=176171 Score = 91.5 bits (100), Expect = 2e-13 Identities = 72/86 (84%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 60055 TGAAAAATTTT---CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 60111 |||||| ||| |||| || | |||||| |||||| ||||||||||||||||||||| Sbjct 71239 TGAAAAGCTTTACACTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGG 71180 Query 60112 CATACTCACCACTATACTACCGAGGA 60137 ||||| |||||||||||| |||||| Sbjct 71179 GATACTGACCACTATACTAACGAGGA 71154 >seq654 Length=178055 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 142032 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 141973 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 141972 TACTAACGAGGA 141961 >seq4812 Length=31676 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||| | Sbjct 28930 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCATT 28989 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 28990 ATACTAACGAGGA 29002 >seq13230 Length=14063 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 || || || | ||||||||||||| ||||| ||||||||||||| || ||||| ||||| Sbjct 3537 TCCCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCAGAGATACTGTCCACT 3596 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 3597 ATACTAACGAGGA 3609 >seq12569 Length=5250 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 || || || | ||||||||||||| ||||| ||||||||||||| || ||||| ||||| Sbjct 5174 TCCCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCAGAGATACTGTCCACT 5115 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 5114 ATACTAACGAGGA 5102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571687525791440