Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3162 104 2e-17 seq6074 102 5e-17 >seq3162 Length=48913 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || ||||||||| |||||||||||||| || ||| | || Sbjct 2799 AGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 2740 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || || || ||||||||||| || | || ||||| || Sbjct 2739 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCC 2680 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | || || |||| |||||||| Sbjct 2679 TGGATCTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 2620 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || |||||||| |||||||| Sbjct 2619 TTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 2588 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || ||| | || |||| ||||||||| || || Sbjct 2550 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 2491 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || || ||||||||||| || | || |||||| || ||| || ||||| | || Sbjct 2490 ATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATC-TTGGCTTTGACATT 2432 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | || || |||| |||||||| ||||| || || || ||||| Sbjct 2431 TTCAATGGTGTCACTGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCAC 2372 Query 34378 AAAGATCTGCAT 34389 ||| |||||||| Sbjct 2371 AAAAATCTGCAT 2360 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||||||| | || || ||||| |||||||||||||| Sbjct 3043 TCCTCCACGGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 2984 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || |||| ||||||||| || || || || ||||||||||| || Sbjct 2983 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGG 2924 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||| ||| | | | || | || | | || || Sbjct 2923 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATAGTGTCACTTGGCTCAAC 2864 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||| ||||||||||| Sbjct 2863 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2816 >seq6074 Length=24291 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || |||| ||||||||| || || Sbjct 4602 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 4661 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| ||||||||| ||| | || |||||||| || || ||| | || Sbjct 4662 ATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTC 4721 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | ||||| |||| |||||||| ||||| ||||| || || ||| Sbjct 4722 TCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACA 4781 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 4782 AAGATCTGCAT 4792 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || |||| ||||||||| || || Sbjct 3767 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 3826 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| ||||||||| ||| | || |||||||| || || ||| | || Sbjct 3827 ATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTC 3886 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | ||||| |||| |||||||| || || ||||| || || || Sbjct 3887 TCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACG 3946 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 3947 AAGATCTGCAT 3957 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || |||| ||| ||||| || || Sbjct 4830 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAG 4889 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| ||||||||| ||| | || |||||||| || || ||| | || Sbjct 4890 ATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTC 4949 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| ||||| ||||| || || ||| Sbjct 4950 TCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACA 5009 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 5010 AAGATCTGCAT 5020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323000346466880