Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq415 293 2e-74 >seq415 Length=356447 Score = 293 bits (324), Expect = 2e-74 Identities = 506/729 (69%), Gaps = 12/729 (2%) Strand=Plus/Plus Query 107694 AGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAA 107753 ||| |||| ||| || || |||||||||||||| |||||| |||||||||||||||| Sbjct 29098 AGTGAAGAGGAGAATGAGTTTCCCATTGCCTACTCCATGGTGATCCATGAGAAGATTGAG 29157 Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 | ||||| || || || ||||| || || || ||||||||||| |||||||| |||||| Sbjct 29158 ATGTTTGAGCGACTTCTACGAGCTGTTTACGCTCCTCAGAACATCTACTGTGTGCACGTG 29217 Query 107814 GATGTGAAGTCC-CCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCC 107872 || ||| ||| | | ||| ||||| | |||| || |||| |||||||||||||| || Sbjct 29218 GACCAGAAATCCTCTAAAGAATTTCAGA-AGGCTGTGGAGGCAATTATTTCCTGCTTTCC 29276 Query 107873 CAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCA 107932 ||||| || ||||||| || | | ||| | |||||||| |||||| ||||||| Sbjct 29277 TAATGTGTTTGGAGCCAGTAGATTAGAAACAGTGATATATGCCTCATGGTCCCGAGTGCA 29336 Query 107933 AGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA---GTGCCATGGAAGTACTT 107989 || || ||||||| ||| |||| |||| ||||||| || | |||| |||| | Sbjct 29337 GGCAGATTTGAACTGCATGAAAGATCTGCT---GAGCTCACATGTCCAGTGGAGGTACCT 29393 Query 107990 ACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCT 108049 || || || |||||||||||||||||||| || ||||||| |||||||| | ||| || Sbjct 29394 TCTTAACACCTGCGGGACAGACTTCCCCATCAAAACCAATGGAGAGATGGTTCAGGCACT 29453 Query 108050 CAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaa 108109 || | || || | ||||| ||||||||||||| | ||| ||| ||| Sbjct 29454 GAAAGCCCTCAACGGGAGAAACAGCATGGAGTCTGAGGCCACCAATGACCACAAGAAAGG 29513 Query 108110 TCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGA 108169 || ||| | || | | | || || ||||| | | || | || ||| Sbjct 29514 CCGTTGGGAGTATCATCACAATGTCACTGACACTGTCATCAGGACAAATGTGAGGAAAAG 29573 Query 108170 CCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGC 108229 ||||| || || |||||||| |||| ||||| |||||||||| | | |||| Sbjct 29574 TCCTCCACCCATTAGCAGCCCCATGTTTTCAGGAAATGCTTATTTTGTGGTCACAAGAGC 29633 Query 108230 CTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGA 108289 |||||| ||||||| | | || || || | | | | || |||| || || Sbjct 29634 CTTTGTGAAACATGTGATGCAGGACAGAGAAGTTCAGAAATTTCTGGAGTGGGAGAAGGA 29693 Query 108290 CACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGCTCCGTGGATGCCT 108347 ||| || ||||| || || ||| | |||||||| || ||| | ||| | || | || Sbjct 29694 CACGTACAGCCCTGATGAGCACTTGTGGGCCACTCTACAGAGGATGCCCTCTG--TTCCC 29751 Query 108348 GGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTC 108407 || || | ||| || ||||||| | || ||||||||| ||| |||| | | Sbjct 29752 GGGTCAATGCCTGCTAACATCAAGTATGATATGTCAGACATGCAAGCCTTCGCTCGTGTG 29811 Query 108408 GTCAAGTGG 108416 || |||||| Sbjct 29812 GTGAAGTGG 29820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348191558115852