Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq4239 132 1e-25 >seq4239 Length=33969 Score = 132 bits (146), Expect = 1e-25 Identities = 394/604 (65%), Gaps = 9/604 (1%) Strand=Plus/Minus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 |||||| | ||| | ||||||| ||||| ||||||||| || || || | || || Sbjct 31417 AGATTTCGCCTACAACTTCTTTGGCTTCAAGACGCTGGAGCGGTCCTACCTGTTGAAGAT 31358 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 ||||||| | | || || ||||||||| | ||| |||||||||| ||||| || Sbjct 31357 CAATGGCAAAGTGGCCGAGCGGCCGCAGCACATGCTCATGAGAGTGGCTGTTGGGATCCA 31298 Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG--AGTGAACGCTGGATG 248985 ||| || || || | ||||||| |||| | || || ||| ||| | Sbjct 31297 CAAAACGGATATCGACGCAGCCATCGAGACCTACAACCTGTTGTCAGAGAAG--TGGTTC 31240 Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGC 249045 || || ||| | || |||||||||||||| || ||| || |||||| | ||| Sbjct 31239 ACCCACGCCTCCCCTACGCTCTTCAACGCAGGAACCAACAGGCCACAGCTGTCCAGCTGC 31180 Query 249046 TTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG 249105 || || || |||||| |||||||| |||| ||||||||||||||||| || || Sbjct 31179 TTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATTTATGACACGCTGAAGCAATGT 31120 Query 249106 GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAG 249165 || || || || || || |||||||| | | ||| | |||| || | | | Sbjct 31119 GCCCTCATCTCCAAGGCAGCTGGAGGAATCGGCGTGGCGGTCAGCTGCATCAGATCAACG 31060 Query 249166 GGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGC 249225 || |||||| || ||||| || | |||| | || ||| | || || Sbjct 31059 GGGAGCTACATCGCTGGCACAAACGGCAACTCCAATGGGCTAGTCCCCATGCTGAGAGTT 31000 Query 249226 TTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGCCGAAAG----GGGTCGTTCGC 249281 | | | ||| || | | || |||||| ||| | | || || | || || Sbjct 30999 TATAACAACACAGCACGTTATGTCGACCAGG-GTGGCAACAAGAGGCCCGGAGCCTTTGC 30941 Query 249282 CATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAA 249341 |||||| |||| |||||| ||| | || || |||||||| |||| ||||||| Sbjct 30940 CATGTACCTGGAGCCCTGGCACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACAC 30881 Query 249342 CGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTT 249401 || || ||| |||||| | || || ||||||| | ||||| || ||||| |||| Sbjct 30880 AGGAAAGGAGGAGCAGAGAGCCAGAGATCTTTTCTACGCCATGTGGATCCCCGACCTGTT 30821 Query 249402 CATG 249405 |||| Sbjct 30820 CATG 30817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073516038612864