Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq6074 120 2e-22 seq3162 109 4e-19 >seq6074 Length=24291 Score = 120 bits (132), Expect = 2e-22 Identities = 154/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| ||||||||||| || ||| | || |||| Sbjct 4813 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 4872 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | ||||| ||||| || |||| || ||| ||||| || || | || ||||||||| | Sbjct 4873 GCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGA 4932 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| ||| || | | | | |||| | ||||||||||| ||| || ||||||| Sbjct 4933 TTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGC 4992 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | || || ||||| |||||||| |||||||| Sbjct 4993 CAGTGAGGGTCTTGACAAAGATCTGCATGTT 5023 Score = 104 bits (114), Expect = 2e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| ||||||||||| || ||| | || |||| Sbjct 4585 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 4644 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| ||||| || || | || ||||||||| | Sbjct 4645 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGA 4704 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| ||| || | | | | |||| | ||| ||||||| ||| || ||||||| Sbjct 4705 TTTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGC 4764 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | || || ||||| |||||||| |||||| Sbjct 4765 CAGTGAGGGTCTTGACAAAGATCTGCATG 4793 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| ||||||||||| || ||| | || |||| Sbjct 3750 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 3809 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| ||||| || || | || ||||||||| | Sbjct 3810 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGA 3869 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| ||| || | | | | |||| | ||| ||||||| ||| || ||||| | Sbjct 3870 TTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTAC 3929 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | || || ||||| || ||||| |||||| Sbjct 3930 CAGTGAGGGTCTTGACGAAGATCTGCATG 3958 >seq3162 Length=48913 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||||||| || ||| | || ||| Sbjct 3024 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 2965 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| ||||| ||||| | || ||||| ||| Sbjct 2964 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGG 2905 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||||| ||| || |||||| Sbjct 2904 ATCTTGGCCTTCACGTTCTCAATAGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTG 2845 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||||||| ||||| |||||| Sbjct 2844 CCAGTCAGGGTCTTCACGAAGATCTGCATG 2815 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| || ||||| |||||||||||| || ||| | || ||| Sbjct 2796 ACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 2737 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| ||||| ||||| | || ||||| ||| Sbjct 2736 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGG 2677 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||||| ||| || |||||| Sbjct 2676 ATCTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTG 2617 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||||||||| || |||||| Sbjct 2616 CCAGTCAGGGTCTTCACAAAAATCTGCATG 2587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394987577012158