Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3162 107 1e-18 seq6074 82.4 6e-11 >seq3162 Length=48913 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || |||| ||| ||||| |||||||| || ||||||||||||| Sbjct 2814 CCTCCCCTCAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGAG 2755 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| || ||||| ||| |||| || | || || || || Sbjct 2754 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 2695 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||||||| || | ||| || | ||| |||||||| |||||| Sbjct 2694 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACC 2635 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| |||| || || |||||||| ||||| Sbjct 2634 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 2588 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || || || || ||||||||||||| | || | |||||||| || Sbjct 2562 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGC 2503 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || | || || || || | ||| |||||||| || | | Sbjct 2502 TTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCT-T 2444 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || ||||| | | ||| ||||||| |||||| || | |||||| | ||||| || Sbjct 2443 GGCTTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGT 2384 Query 18302 CAATGTTTTTACAAAAATTTGCATTTTTAAACTCTT 18337 || || || |||||||| |||||||| | ||| || Sbjct 2383 CAGGGTCTTCACAAAAATCTGCATTTTGACACTGTT 2348 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | || |||| ||| || || || || || || ||||||||||||| Sbjct 3043 TCCTCCACGGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 2984 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||||| || ||||| ||| |||| || | || || || || Sbjct 2983 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGG 2924 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||||||| || | ||| || | ||| |||||||| ||||| Sbjct 2923 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATAGTGTCACTTGGCTCAAC 2864 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| |||| || || || || || ||||| Sbjct 2863 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2816 >seq6074 Length=24291 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || || || || ||||||||||| | | || | |||||||| || Sbjct 4590 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 4649 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || || || ||| | ||||||||| || |||| Sbjct 4650 TTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTA 4709 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | ||| ||||||| ||||||| || | ||||||| | ||||| || Sbjct 4710 GCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTG 4769 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || ||||| Sbjct 4770 AGGGTCTTGACAAAGATCTGCAT 4792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379259866005510