Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4239 455 3e-123 seq1161 120 3e-22 seq3162 114 1e-20 seq6074 98.7 9e-16 >seq4239 Length=33969 Score = 455 bits (504), Expect = 3e-123 Identities = 1088/1634 (67%), Gaps = 33/1634 (2%) Strand=Plus/Plus Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGAT 22425 ||| | ||||||||||| || | | || || ||| ||| |||||| || | Sbjct 29833 CTGAATGGACCCGTTATGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGCCCCCT 29892 Query 22426 GGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCG 22485 | |||| ||||||| |||||| | ||||| | |||||||| || || | ||| | Sbjct 29893 CTCCGTCAGGTCTTTGAGCAGATGTGGATTCACGATCTGAAACTCTCCAGAGAGGACCCT 29952 Query 22486 GCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGC 22545 ||| ||| |||||| ||| | | ||| | ||| |||||||| ||||| ||||| || Sbjct 29953 GCGGGTGTAGATGTTGCTGGTGTAAGCTTCAATAGACTCATTGTTGCCCAGGATCTGGGC 30012 Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT 22605 ||| || || || |||||||| |||| ||| || ||| |||| ||||||||| | ||| Sbjct 30013 GGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCAAT 30072 Query 22606 TTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATC 22665 || ||| |||| | ||||||| ||| |||| || ||| || |||||||| || Sbjct 30073 CTTCTCCTTCAGCAGCTTCCAGTCCAGCAGGTCGGTGGGTGTC---TTCTCCCACATGTC 30129 Query 22666 GTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATAT 22725 ||| || | | |||| || | || |||||||||||| || || || ||| | | Sbjct 30130 GTACTGGAGGATGCCGTTGCTGACGGGAGAGCCTTCGTACGTCTCATAGGGGCCA-AGCT 30188 Query 22726 C-GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCT 22784 | || || || |||||||| ||||||| ||| |||| || || ||||| ||||| | Sbjct 30189 CAGCCGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAA 30248 Query 22785 TGTTCAATTCGGC--GGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTC 22842 |||||| | || || || ||||||| |||| |||||| | | ||| || || Sbjct 30249 TGTTCA--GCAGCTGAGCCTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATC 30306 Query 22843 CGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTC 22902 |||| |||||| || || || || || || | || | || ||| || ||| || Sbjct 30307 GGCCAAACCCTGGACACCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTTTCTGCTTC 30366 Query 22903 GGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGT 22962 |||| ||||| | || || ||| | |||| |||||| || | | ||| || Sbjct 30367 AGGCACTGGATAGAAGTTAATCTCAATTATCTTGTTTAAGTTTTTGACTATTACTTTGGT 30426 Query 22963 TATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT--TGTACAACAAACTTGTTGACG 23020 | | |||||| ||| | | | | | || || |||||| Sbjct 30427 CACATACGCTAGTTTCTTAAAGTC--AAAAGTCTGCTCAGGGGTGACGTACATGTTGAGT 30484 Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 || || ||||| ||||| || || |||||||| || | | ||||| || | ||||| Sbjct 30485 GCAATGGAGGCCAGATTACAGACAGCCACCTCATCGTGGCTGGTGTATTCAATGATTTCT 30544 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || || ||||| | ||| || ||||| | ||| ||||||||| || | |||||| Sbjct 30545 GTGCAGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTTGCAC 30604 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | |||||||| |||||||| ||||| || || || ||| |||||||| || || || Sbjct 30605 GCGTCCTTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTGC 30664 Query 23201 CACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTAC 23260 |||| |||||| | || ||| | ||| || || | ||| || | ||||| Sbjct 30665 CACAGCTGCTGAGCCTTCACCAAGCGCTTGACCCTCCCCTCCTTCTCATA--TGTGGTAT 30722 Query 23261 AACGC--GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACA 23318 | || ||||| || | || | || ||| |||| || || | | | ||||||| Sbjct 30723 AGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCCGGGCACTCACTTGGACACA 30782 Query 23319 TGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 | ||| ||| | || |||| || | |||| || || || || ||||| | | Sbjct 30783 TCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGG 30842 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 ||||||| || || | ||| | | |||||| || || |||||||| |||| |||| | Sbjct 30843 CGTAGAAAAGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGA 30902 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 |||| ||||| || ||||| ||||| ||||| | |||||| || || || ||||| | Sbjct 30903 AGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGCCTCTTGT 30962 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 |||| ||||| ||||| ||||| || |||||||| || ||||| ||||| || || || | Sbjct 30963 TGCCACCCTGGTCGACATAACGTGCTGTGTTGTTATAAACTCTCAGCATGGGGACTAGCC 31022 Query 23559 CGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCTTTTGCTCGAACGTTG-TGA 23614 | ||||| |||| | ||| || | ||| || ||| || | | | ||| Sbjct 31023 CATTGGAGTTGCCGTTTGTGCCAGCGATGTAGCTC---CCCGTTGATCTGATGCAGCTGA 31079 Query 23615 ACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCG 23674 || | || || ||||| | | || || || | || ||||| ||||| ||||| Sbjct 31080 CCG-CCACGCCGATTCCTCCAGCTGCCTTGGAGATGAGGGCACATTGCTTCAGCGTGTCA 31138 Query 23675 TAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCT 23734 || ||||| ||||||||||| ||||| | |||| || ||| || |||| || | Sbjct 31139 TAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGC 31198 Query 23735 TTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCA-TTC---GA 23790 || || | || ||| || || ||| |||||| || || ||| ||| || Sbjct 31199 CTGTTGGTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGGGTGAA----CCACTTCTCTGA 31254 Query 23791 CATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGAC 23850 || || ||||| || |||||||| || || || ||| | ||| || || | || || Sbjct 31255 CAACAGGTTGTAGGTCTCGATGGCTGCGTCGATATCCGTTTTGTGGATCCCAACAGCCAC 31314 Query 23851 GCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGA 23910 | ||| | ||||| || || | |||| || ||| || || || ||||| || || Sbjct 31315 TCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCATTGATCTTCAACAGGTAGGA 31374 Query 23911 ACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGC 23970 || | || ||| || || ||||| ||| ||| || || || ||| | ||||| Sbjct 31375 CCGCTCCAGCGTCTTGAAGCCAAAGAAGTTGTAGGCGAAATCTCGGTCGAAAATGATGGC 31434 Query 23971 CGAATTCAAACGGT 23984 ||| || | |||| Sbjct 31435 CGAGTTGAGGCGGT 31448 >seq1161 Length=118247 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || ||| ||||||| || || || ||||| | ||| |||| || || | ||| | Sbjct 53427 TTTCCACTCGTTTCATAAAGAGGTCTGGGATCCACATGGCGAAGAAAAGGTCTCTGGCCC 53368 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||||||||| || |||||||| ||||| || || ||||| ||||| || | ||||| Sbjct 53367 TCTGCTCCTCTTTACCTGTGTTCTTCTTCAACTCTAAGAAGTCAAACACATCGGAATGCC 53308 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| || || || || || ||||||| Sbjct 53307 ACGGCTCCAGGTACACAGCGAAGGCCCCAGGTCTCT 53272 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 ||||||||||||| ||||||||||| || || || || |||||||| | || || || Sbjct 53960 CACCTCGTCTTTGCTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGT 53901 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||||| || | ||||| | ||||||||||||||||| ||||| Sbjct 53900 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGT 53841 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || || || ||| ||||| || || || ||||| Sbjct 53840 ACCGGTTTCTGTCTGAGACTCAATTATAGCGTACCACA 53803 >seq3162 Length=48913 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 2587 CATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 2646 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | || || | || ||| ||||||||| | || || ||||| Sbjct 2647 TGACACTATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCA 2706 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||| ||||||| || | ||| || || Sbjct 2707 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 2766 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || |||||||| || || || ||||| || | |||||||| || Sbjct 2767 CATCCAGAAAGAATCCACACTCCACCTGGTCCTCCGTCTGAGGGGAGG 2814 Score = 102 bits (112), Expect = 7e-17 Identities = 163/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| ||||| || ||||| ||||| ||||| || ||||| | || ||||| Sbjct 2355 TCAAA-ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTTGAG 2413 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| | |||| |||||| | || ||| ||||| ||| | || || Sbjct 2414 CCCAGTGACACCATTGAAAATGTCAAAGCCAAGATCCAGGATAAGGAGGGCATCCCTCCA 2473 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 |||||||||||||| || || |||||||| ||| ||||||| || | ||| Sbjct 2474 GACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGAC 2533 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || || || || || ||||| || || | ||||| || || Sbjct 2534 TACAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGAGGAGG 2586 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 2815 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAG 2874 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | || || | || ||| ||||||||| | || || ||||| Sbjct 2875 TGACACTATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCA 2934 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || || |||||||| ||| ||||||| Sbjct 2935 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGA 2970 >seq6074 Length=24291 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| || || ||||| || |||||| | || || || | Sbjct 5025 CAAACATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGC 4966 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| | || | ||||| | ||| ||||||||||||| | || || | Sbjct 4965 CCAGCGACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAG 4906 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||| | || || || || ||||||||| ||||||| || | || | Sbjct 4905 ACCAGCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACT 4846 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | ||||| || || || || || || ||||| || || | |||||||| || Sbjct 4845 ACAACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 4794 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || || |||||| | || || || || Sbjct 3958 CATGCAGATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAG 3899 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | ||| ||||||||||||| | || || ||||| Sbjct 3898 CGACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCA 3839 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| ||||||| || | || || || Sbjct 3838 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 3779 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || ||||| || || | |||||||| || Sbjct 3778 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 3731 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || || ||||| || |||||| | || || || || Sbjct 4793 CATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAG 4734 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | ||| ||||||||||||| | || || ||||| Sbjct 4733 TGACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCA 4674 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| ||||||| || | || || || Sbjct 4673 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 4614 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || ||||| || || | |||||||| || Sbjct 4613 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 4566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445664999288160