Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4239 562 4e-155 seq7404 93.3 5e-14 >seq4239 Length=33969 Score = 562 bits (622), Expect = 4e-155 Identities = 1298/1944 (67%), Gaps = 23/1944 (1%) Strand=Plus/Plus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| ||||| || |||| | ||||| || | || | || ||||| || || Sbjct 29864 TTCTTCATCTCCTCGCTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGTGGATTC 29923 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | || || |||||||| | || || || ||||| || || ||||| || | ||| Sbjct 29924 ACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCTTCA 29983 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | |||||||| || |||| || || || || || || || ||||| || |||| || Sbjct 29984 ATAGACTCATTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 30043 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | ||| || || | |||| | || || || || || | | ||| | | || Sbjct 30044 AGACTGTTCCTCACGCCGTGCTTGGCAATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGG 30103 Query 62565 TCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCT 62624 || | ||| || || || || ||||| ||| || || ||| Sbjct 30104 TCGGTGGGTGTCTTCTCCCACATGTCGTACTGGAGGATGCCGTTGCTGACGGGAGAGCCT 30163 Query 62625 ACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCG 62684 | || || ||||| || || || | || || | || || ||||| | || || Sbjct 30164 TCGTACGTCTCATAGGGGCCAAGCTCAGCCGCCAGCTCGCAGCTTGCCTCCAGGGCGGCG 30223 Query 62685 TAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGA 62744 || || ||||| |||||||||| | || || || || || ||||| || || || Sbjct 30224 TAGTAGATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGG 30283 Query 62745 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62804 ||| | ||| || || || || || || || || ||||| || || || || || || Sbjct 30284 TAACGCATGAGGATGAAGGCATCGGCCAAACCCTGGACACCGATTCCTATTGGCCTGTGA 30343 Query 62805 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62864 | ||| || || |||| ||||| || | ||||| | ||||| || || || || || Sbjct 30344 CGCTTGTTGGACTTTTCTGCTTCAGGCACTGGATAGAAGTTAATCTCAATTATCTTGTTT 30403 Query 62865 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TC-GCCCA 62921 | ||| |||| ||||||||| ||||| | ||||| ||| ||||| || || || Sbjct 30404 AAGTTTTTGACTATTACTTTGGTCACATACGCTAGTTTCTTAAAGTCAAAAGTCTGCTCA 30463 Query 62922 TCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCAT--TAG 62979 | || ||||||| | ||||| || ||||||||||| || || ||||||| | | Sbjct 30464 GGGGTGACGTACATGTTGAGTGCAATGGAGGCCAGATTACAGACAGCCACCTCATCGTGG 30523 Query 62980 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTT 63039 | | |||| || || || ||||| || || || | |||||| || |||| ||| | Sbjct 30524 CTGGTG--TATTCAATGATTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCTAGATTCT 30581 Query 63040 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 63099 | || || ||||| |||| ||||| ||||| || || ||| |||| ||||| ||||| Sbjct 30582 GCTGGTTGCTCTTCCTGTTGCACGCGTCCTTGTACAGCATGTATGGCGTACCGGTTTCTG 30641 Query 63100 TCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTC 63158 |||| || || ||||| || | ||| | | || ||||||| | | ||| ||| Sbjct 30642 TCTGGGACTCGATAATGGCGTGCCACAGCTGCT-GAGCCTTCACCAAGCGCTTGACCCTC 30700 Query 63159 CTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 63218 | || | || ||| ||||| | || ||||| || ||||| | ||||| Sbjct 30701 CCCTCCTTCTCATATGTGGTATAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGC 30760 Query 63219 CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT--CACTCGTTTCA 63276 | || || ||| |||||||||| ||||| ||| || | ||| ||||| |||| Sbjct 30761 CCCGGGCACTCACTTGGACACATCAGAGACCAGTCTTGGT--TGCTTTCCACTCTCTTCA 30818 Query 63277 TAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTT 63335 | || || || || ||||| | || || ||| |||||||| | ||| || ||||| ||| Sbjct 30819 TGAACAGGTCGGGGATCCACATGGCGTAGAAA-AGATCTCTGGCTCTCTGCTCCTCCTTT 30877 Query 63336 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63395 ||||| ||||| || || || ||||| | | | |||| | ||||| || |||| ||| Sbjct 30878 CCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTAC 30937 Query 63396 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63455 ||||| | |||| |||| ||||| || ||||| || | || | || ||||| ||| Sbjct 30938 ATGGCAAAGGCTCCGGGCCTCTTGTTGCCACCCTGGTCGACATAACGTGCTGTGTTGTTA 30997 Query 63456 TAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCT 63515 |||||||||| ||| || | | || || || | || || || || | ||| |||| Sbjct 30998 TAAACTCTCAGCATGGGGACTAGCCCATTGGAGTTGCCGTTTGTGCCAGCGATGTAGCTC 31057 Query 63516 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63575 || | | | || || | | | || ||||| || || || ||||| | Sbjct 31058 CCCGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCTGCCTTGGAGATGAGG 31117 Query 63576 GCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGA 63635 || ||| | || | ||||||||| |||||||| ||||| || || ||||| || || Sbjct 31118 GCACATTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGG 31177 Query 63636 AAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63695 || ||||| |||| || | | | ||||| || || || | ||||| || ||||| Sbjct 31178 AAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGG 31237 Query 63696 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA 63755 || ||||| || || || | || ||||| ||||| || |||| ||| |||||| || Sbjct 31238 GTGAACCACTTCTCTGACAACAGGTTGTAGGTCTCGATGGCTGCGTCGATATCCGTTTTG 31297 Query 63756 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTT 63815 || || || || || || | ||| | ||||||||| || | || | | |||| || Sbjct 31298 TGGATCCCAACAGCCACTCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCATTG 31357 Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63875 || ||||||| |||||| |||| || || || ||||| ||||||| | || ||| Sbjct 31358 ATCTTCAACAGGTAGGACCGCTCCAGCGTCTTGAAGCCAAAGAAGTTGTAGGCGAAATCT 31417 Query 63876 CGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTA 63935 || ||| |||| || |||| ||||| || |||| | ||| || || | || Sbjct 31418 CGGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTATTCTCAAGAACAATGTCGAGCGT- 31476 Query 63936 ATACTT-GAAATAATCGGAGAAT---GTTTCCCATTTTTAGGATTAACATAGTTGAATAA 63991 | ||| || || || ||||| | |||| |||| || || || |||||||| | Sbjct 31477 CTCCTTGGAGATCATGGGAGAGTGGCGTTT---ATTTAAGGGGTTGACGTAGTTGAACAG 31533 Query 63992 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTAT 64051 ||||||||||| ||||| || | || || || || ||||| || ||||| | ||| || Sbjct 31534 GTCCTCCATCACATCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGAT 31593 Query 64052 TCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGC 64111 | ||||| || |||||||| || || |||| || || |||||| || || || || Sbjct 31594 GCGCGCGGCGAGGATGGCATAGTCGGGGTGTTTAGTGGTGAGAGTGGCGGCGATCTCTGC 31653 Query 64112 TGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 |||||| ||||| | || || || || |||||| | || | || || || |||||||| Sbjct 31654 TGCCAGTGTGTCGAGCTCCACGGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 31713 Query 64172 AGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACG 64231 | || | ||||| | | || | ||| | ||| ||||||| || || || Sbjct 31714 CGTAATCTGGGCCGGATCCACAAAGTCAGAGTTCAGGCCGTAGCACAGCTTCTGGATGCG 31773 Query 64232 AGACGTGATTTTATCAAACATGAC 64255 ||| ||||||||||| |||||||| Sbjct 31774 AGAGGTGATTTTATCGAACATGAC 31797 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||| || || |||||| || |||| || || || ||||| | Sbjct 29039 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCAGCAATGTGGATGT 29098 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| || || || || ||||||||||| || | ||| || ||||| || | || |||| Sbjct 29099 TCAGGGACTGGCTCTGGTCGATGAAGGCACCGCGGTCGGCGGCCATCTTGAGTATGGTCT 29158 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | |||||||| | |||| | ||| | ||||| Sbjct 29159 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTGTGGAA 29209 >seq7404 Length=21843 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || || |||||||| ||||| | ||| | Sbjct 16232 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 16173 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || | |||||| || || || ||||||||||| || || || || |||| Sbjct 16172 TCAGCCAGAAGATCGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 16113 Query 33724 C 33724 | Sbjct 16112 C 16112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629674332241440