Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4239 192 5e-44 seq7404 89.7 5e-13 >seq4239 Length=33969 Score = 192 bits (212), Expect = 5e-44 Identities = 912/1433 (64%), Gaps = 21/1433 (1%) Strand=Plus/Plus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 || |||||||| || | |||||| |||||||| | || || | || || || ||||| Sbjct 29912 AGATGTGGATTCACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTG 29971 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || | |||||| |||||||| || | | || || | || || || || ||||| Sbjct 29972 GTGTAAGCTTCAATAGACTCATTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATC 30031 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | || || || || |||| || || | ||| ||| || || ||| Sbjct 30032 GGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCAATCTTCTCCTTCAGCAGCTTC 30091 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 || ||| | || || || |||| |||||| || || || || || || || || Sbjct 30092 CAGTCCAGCAGGTCGGTGGGTGTCTTCTCCCACATGTCGTACTGGAGGATGCCGTTGCTG 30151 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCT---AGTTCGCAACTA 37419 | ||||| | | || |||||||| || || || | ||| || ||||| || Sbjct 30152 ACGGGAGAGCCTTCGTACGTCTCATAGGGGCC---AAGCTCAGCCGCCAGCTCGCAGCTT 30208 Query 37420 GATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCT 37479 | || || ||||| || || || || || || || || || || | | | || || Sbjct 30209 GCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCCTCG 30268 Query 37480 TCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATA 37539 ||| ||||| | || | || | || || |||| ||||||||||| |||||||| Sbjct 30269 GGGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCGGCCAAACCCTGGACACCGATT 30328 Query 37540 CCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATA 37599 ||||| || || || ||| || || | | ||| ||||||||| | || || Sbjct 30329 CCTATTGGCCTGTGACGCTTGTTGGACTTTTCTGCTTCAGGCACTGGATAGAAGTTAATC 30388 Query 37600 TCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA- 37658 || ||||| || |||| ||||| |||| || ||| || | || | | | || || Sbjct 30389 TCAATTATCTTGTTTAAGTTTTTGACTATTACTTTGGTCA-CATACGCTAGTTTCTTAAA 30447 Query 37659 --CATAAATACG-TTATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATAC 37715 || || | | | | | || | | | | | ||| || | |||||||| || Sbjct 30448 GTCAAAAGTCTGCTCAGGGGTGACGTACATGTTGAGTGCAATGGAGGCCAGATTACAGAC 30507 Query 37716 AGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATC-TAA 37774 ||| || ||||| | | | | ||| || || ||||| ||||| || || | || | | Sbjct 30508 AGCCACCTCATCGTGGCTGGTGTATTCAATGATTTCTGTGCAGAGGTTGCT-GCTCTTGA 30566 Query 37775 TTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACG 37834 | || || | ||| || ||| || | || || | || || || || || || | Sbjct 30567 TGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCCTTGTACAGCATGTATG 30626 Query 37835 GCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT--TGCTTTAAC 37892 |||| || |||| | || | ||||||||| | | ||| | || || ||| | | Sbjct 30627 GCGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCA-CAGCTGCTGAGCCTTCACC 30685 Query 37893 GATCGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCC 37952 | ||| || | | || | || ||| |||| | || | ||| || | ||| Sbjct 30686 AAGCGC-TTGACCCTCCCCTCCTTCTCATATGTGGTATAGAGCTTCTCAAACTCCTCCCC 30744 Query 37953 CCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTT 38012 ||| ||| | || || || || | ||||||||| |||||||| |||| | | Sbjct 30745 CCAGCACTCGTCCAGCCCCGGGCACTCACTTGGACACATCAGAGACCAGTCTTGGTTGCT 30804 Query 38013 TTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTC 38071 ||| || | | ||| || | || || | ||| ||| ||| || | |||| ||| || Sbjct 30805 TTCCACTCTCTTCATGAACAGGTCGGGGATCCA-CATGGCGTAGAAAAGATCTCTGGCTC 30863 Query 38072 TATATTCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGC 38130 | | || || || ||| ||| ||||| |||| || || || || | |||| |||| Sbjct 30864 TCTGCTCCTCCTTTCCTGTGTTC-TTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGC 30922 Query 38131 CATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATAT 38190 || || || | || || | | ||||| || || || | || ||||| | | ||| Sbjct 30923 CAGGGCTCCAGGTACATGGCAAAGGCTCCGGGCCTCTTGTTGCCACCCTGGTCGACATAA 30982 Query 38191 CTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATA 38250 | ||||||| ||||| | ||| | ||| || |||| ||||| || ||||||||| | Sbjct 30983 CGTGCTGTGTTGTTATAAACTCTCAGCATGGGGACTAGCCCATTGGAGTTGCCGTTTGTG 31042 Query 38251 CCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCA 38310 || | || || | ||| | | || || || | || || || ||||| || || Sbjct 31043 CCAGCGATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCT 31102 Query 38311 TGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCC 38370 || || || | || ||||| || | ||| ||| | || ||||| || ||||| || Sbjct 31103 GCCTTGGAGATGAGGGCACATTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCT 31162 Query 38371 TTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAAT 38430 || || | || | || || || |||| || ||| ||||| ||||| || | Sbjct 31163 TTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGC 31222 Query 38431 GTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCA 38490 ||||| || || || ||||||| || || ||||| || || || || || | | Sbjct 31223 GTAGGGGAGGCGTGGGTGAACCACTTCTCTGACAACAGGTTGTAGGTCTCGATGGCTGCG 31282 Query 38491 TCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 || ||||| ||| || || | || || ||||| ||||| || || || Sbjct 31283 TCGATATCCGTTTTGTGGATCCCAACAGCCACTCTCATGAGCATGTGCTGCGG 31335 >seq7404 Length=21843 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || || | |||||||||| |||| || || Sbjct 16230 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 16171 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || ||||| || |||||||| ||||| ||||||||||| || || || || Sbjct 16170 AGCCAGAAGATCGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGGCC 16111 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 16110 ACCACGCGCTCTCC 16097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468418222321120