Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4239 583 1e-161 seq1187 87.8 2e-12 >seq4239 Length=33969 Score = 583 bits (646), Expect = 1e-161 Identities = 1324/1977 (67%), Gaps = 27/1977 (1%) Strand=Plus/Plus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 ||||||||| || || || || | | ||||| ||||| || |||| | || Sbjct 29833 CTGAATGGACCCGTTATGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGCCCCCT 29892 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 ||| || | || | || ||||| ||||| || | ||||| |||||||| | || || Sbjct 29893 CTCCGTCAGGTCTTTGAGCAGATGTGGATTCACGATCTGAAACTCTCCAGAGAGGACCCT 29952 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || ||||| || || ||||| || | ||| | ||||||||| || |||| || || || Sbjct 29953 GCGGGTGTAGATGTTGCTGGTGTAAGCTTCAATAGACTCATTGTTGCCCAGGATCTGGGC 30012 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326 || || || || ||||| || |||| || | ||| || || | |||| | || Sbjct 30013 GGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCAAT 30072 Query 65327 TTTATCTTTTAG-AGGTTCCCAATTCCAA-AGATCCGACGGTACAACNNNNNNNNNNNNN 65384 || || || || || |||| | |||| || || | ||| Sbjct 30073 CTTCTCCTTCAGCAGCTTCC--AGTCCAGCAGGTCGGTGGGTGTCTTCTCCCACATGTCG 30130 Query 65385 NNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 65444 || || || ||||| ||| || || ||| | || || || || || || || Sbjct 30131 TACTGGAGGATGCCGTTGCTGACGGGAGAGCCTTCGTACGTCTCATAGGGGCCAAGCTCA 30190 Query 65445 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 65504 | || || || || || ||||| | || |||| || ||||| || ||||||| | Sbjct 30191 GCCGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAATG 30250 Query 65505 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 65564 || || || || || |||| || || || ||| | ||| || || || || || Sbjct 30251 TTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCGGCC 30310 Query 65565 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 65624 || || || ||||| || || || || || || | ||| || || |||| ||||| || Sbjct 30311 AAACCCTGGACACCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTTTCTGCTTCAGGC 30370 Query 65625 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 65684 | ||||| | ||||| || || || || || | ||| |||| ||||||||| |||| Sbjct 30371 ACTGGATAGAAGTTAATCTCAATTATCTTGTTTAAGTTTTTGACTATTACTTTGGTCACA 30430 Query 65685 TCCTTCAGTTTGAGAAAATCAAA--TC-GCTCATCTATTACAAACATGTTCAATGCAACA 65741 | | ||||| ||| ||||| || ||||| | || ||||||| | ||||| Sbjct 30431 TACGCTAGTTTCTTAAAGTCAAAAGTCTGCTCAGGGGTGACGTACATGTTGAGTGCAATG 30490 Query 65742 GATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGC 65799 || ||||||||||| || || ||||||| | || | |||| || || || |||| Sbjct 30491 GAGGCCAGATTACAGACAGCCACCTCATCGTGGCTGGTG--TATTCAATGATTTCTGTGC 30548 Query 65800 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 65859 | || || || | ||||||||| |||| ||| || || || ||||| |||| ||||| | Sbjct 30549 AGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGT 30608 Query 65860 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919 |||| || || ||| |||| ||||| ||||| |||| || || ||||| || | ||| | Sbjct 30609 CCTTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACA 30668 Query 65920 -CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAAT 65978 | || ||||||| | | ||| ||| || | || ||| ||||| | Sbjct 30669 GCTGCT-GAGCCTTCACCAAGCGCTTGACCCTCCCCTCCTTCTCATATGTGGTATAGAGC 30727 Query 65979 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 66038 || ||||| || ||||| | ||||| || || || ||| |||||||||| Sbjct 30728 TTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCCGGGCACTCACTTGGACACATCAGA 30787 Query 66039 GACCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-T 66095 ||||| ||| || | ||| ||||| ||||| || || || || ||||| | || | Sbjct 30788 GACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGT 30845 Query 66096 ATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 66155 | ||| | |||||||| ||| || ||||| |||||||| ||||| || || || ||||| Sbjct 30846 AGAAA-AGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 30904 Query 66156 GCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 66215 | | | |||| | ||||| || |||| ||| ||||| | |||| |||| ||||| Sbjct 30905 TCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGCCTCTTGTTG 30964 Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || ||||| || | || | || ||||| ||||||||||||| ||| || | | ||| Sbjct 30965 CCACCCTGGTCGACATAACGTGCTGTGTTGTTATAAACTCTCAGCATGGGGACTAGCCCA 31024 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 ||||| | || || || || | ||| ||||| || ||| | || || | | Sbjct 31025 TTGGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCC 31084 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | || ||||| || || || ||||| | || ||| | || | ||| ||||| ||| Sbjct 31085 ACGCCGATTCCTCCAGCTGCCTTGGAGATGAGGGCACATTGCTTCAGCGTGTCATAAATG 31144 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 66455 || || || || || || ||||| || || || ||||| |||| || | | | Sbjct 31145 CCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTG 31204 Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| || || || | ||||| || ||||| || ||||| || || || | || ||| Sbjct 31205 GTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGGGTGAACCACTTCTCTGACAACAGGTTG 31264 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || ||||| || |||| ||| |||||| || || || || || || || | ||| | | Sbjct 31265 TAGGTCTCGATGGCTGCGTCGATATCCGTTTTGTGGATCCCAACAGCCACTCTCATGAGC 31324 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 |||||||| || | || | | ||| || || ||||||| |||||| |||| Sbjct 31325 ATGTGCTGCGGCCGCTCGGCCACTTTGCCATTGATCTTCAACAGGTAGGACCGCTCCAGC 31384 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 66695 || || || ||||| ||||||| | || ||||| ||| |||| || |||||||||| Sbjct 31385 GTCTTGAAGCCAAAGAAGTTGTAGGCGAAATCTCGGTCGAAAATGATGGCCGAGTTGAGG 31444 Query 66696 TTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAAT---G 66751 || |||| | ||| | || | || | ||| || || || ||||| | | Sbjct 31445 CGGTCTTTATTCTCAAGAACAATGTCGAGCGT-CTCCTTGGAGATCATGGGAGAGTGGCG 31503 Query 66752 TTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 66811 ||| |||| || ||||| |||||||| | ||||||||||| ||||| || | || Sbjct 31504 TTT---ATTTAAGGGGTTGACGTAGTTGAACAGGTCCTCCATCACATCACTGAACACCTT 31560 Query 66812 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGG 66871 || || |||||||| || ||||| ||||| || | ||||| | |||||||| || || Sbjct 31561 CTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATGCGCGCGGCGAGGATGGCATAGTCGGG 31620 Query 66872 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGT 66931 |||| || || |||||| || || || |||||||| ||||| | || || || || Sbjct 31621 GTGTTTAGTGGTGAGAGTGGCGGCGATCTCTGCTGCCAGTGTGTCGAGCTCCACGGTGGT 31680 Query 66932 TACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 66991 |||||| | || | || ||||| |||||||| | || | ||||| | | || Sbjct 31681 GACTCCACTGTACAGACCCTGGATCACCTTCATCGTAATCTGGGCCGGATCCACAAAGTC 31740 Query 66992 AGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGAC 67048 || ||| | ||| || || | || || ||||| ||||||||||| |||||||| Sbjct 31741 AGAGTTCAGGCCGTAGCACAGCTTCTGGATGCGAGAGGTGATTTTATCGAACATGAC 31797 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || ||||| || || |||||| || |||| || || || ||||| | Sbjct 29039 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCAGCAATGTGGATGT 29098 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| || || || || ||||||||||| || | ||| || ||||| || | || |||| Sbjct 29099 TCAGGGACTGGCTCTGGTCGATGAAGGCACCGCGGTCGGCGGCCATCTTGAGTATGGTCT 29158 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | |||||||| | |||| | ||| | ||||| Sbjct 29159 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTGTGGAA 29209 >seq1187 Length=147014 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 9264 TGCAAGAACAGATTGATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCA 9323 |||| ||| || |||| ||| |||| ||||| ||||| ||||| | | | || ||| Sbjct 122451 TGCAGGAAGAGGTTGACGATGTCCAGGTAGAGGTTGATGGAGGCCAGAATGTGCTCCTCA 122510 Query 9324 GGCGAGAGCTTATGTATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGG 9383 || ||||||| | || || || ||||||||||| ||||| |||||||| || || Sbjct 122511 GGGGAGAGCTGCTTCATCAGCAGGTTGGTGTCATAGATGATGAAACCGCAGAAGACCAGA 122570 Query 9384 GCCCCAAAAGCAGACAGGACCAGCTC 9409 ||||| ||| |||||||||||| Sbjct 122571 GCCCCGGCTCCAGCCAGGACCAGCTC 122596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658023082142320