Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4239 572 2e-158 seq7404 105 1e-17 seq1161 87.8 3e-12 >seq4239 Length=33969 Score = 572 bits (634), Expect = 2e-158 Identities = 1328/1979 (67%), Gaps = 31/1979 (2%) Strand=Plus/Plus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 ||||||||| || || || || | | ||||| ||||| || |||| | || Sbjct 29833 CTGAATGGACCCGTTATGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGCCCCCT 29892 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 ||| || | || | || ||||| ||||| || | ||||| |||||||| | || || Sbjct 29893 CTCCGTCAGGTCTTTGAGCAGATGTGGATTCACGATCTGAAACTCTCCAGAGAGGACCCT 29952 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || ||||| || || ||||| || | ||| | || ||||| || |||| || || || Sbjct 29953 GCGGGTGTAGATGTTGCTGGTGTAAGCTTCAATAGACTCATTGTTGCCCAGGATCTGGGC 30012 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG-- 79203 || || || || ||||| || |||| || | ||| || || | |||| | | | Sbjct 30013 GGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGT--GCTTGGCA 30070 Query 79204 ATTTTATCTTTTAG-AGATTCCCAATCCCAAAGATCAGACGG-GACAACATTCCAAAGAT 79261 || || || || || || |||| | ||| || || | || | | | | ||| | | Sbjct 30071 ATCTTCTCCTTCAGCAGCTTCC-AGTCCAGCAGGTCGGTGGGTGTCTTC-TCCCACATGT 30128 Query 79262 CATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCT 79321 | || || || || ||||| || || || ||| ||| || ||||| || || || Sbjct 30129 CGTACTGGAGGATGCCGTTGCTGACGGGAGAGCCTTCGTACGTCTCATAGGGGCCAAGCT 30188 Query 79322 TTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCT 79381 | || | || || || ||||| | || |||| || ||||| || || |||| Sbjct 30189 CAGCCGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAA 30248 Query 79382 TATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTG 79441 | || || || || || |||| || || || ||| | ||| || || || || | Sbjct 30249 TGTTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCGG 30308 Query 79442 CTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTG 79501 | || || || ||||| || || || || || || | ||| || || |||| ||||| | Sbjct 30309 CCAAACCCTGGACACCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTTTCTGCTTCAG 30368 Query 79502 GAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCA 79561 | | ||||| | ||||| || || || || || | || |||||||||||||| || Sbjct 30369 GCACTGGATAGAAGTTAATCTCAATTATCTTGTTTAAGTTTTTGACTATTACTTTGGTCA 30428 Query 79562 CATCCTTTAGTTTGAGAAAATCAAA--TCGTC-CATCTATTACAAACATGTTCAACGCGA 79618 ||| | |||||| ||| ||||| || | || | || ||||||| | || | Sbjct 30429 CATACGCTAGTTTCTTAAAGTCAAAAGTCTGCTCAGGGGTGACGTACATGTTGAGTGCAA 30488 Query 79619 CAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATTTCAGT 79676 || ||||||||||| || || ||||||| | || | |||| || ||||| || Sbjct 30489 TGGAGGCCAGATTACAGACAGCCACCTCATCGTGGCTGGTG--TATTCAATGATTTCTGT 30546 Query 79677 GCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 79736 ||||||||| || | ||| ||||| |||| ||| || || || ||||| |||| ||||| Sbjct 30547 GCAGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTTGCACGC 30606 Query 79737 ATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 79796 ||||| || || ||| | || ||||| ||||| |||| || || ||||| || | ||| Sbjct 30607 GTCCTTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCA 30666 Query 79797 GA-CGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATA 79855 | | || ||||||| | | |||| ||| || | || ||| ||||| | Sbjct 30667 CAGCTGCT-GAGCCTTCACCAAGCGCTTGACCCTCCCCTCCTTCTCATATGTGGTATAGA 30725 Query 79856 ATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCA 79915 || ||||| || ||||| ||||| | || || || || |||||||||| Sbjct 30726 GCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCCGGGCACTCACTTGGACACATCA 30785 Query 79916 ACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 79973 ||||| ||| | | |||| |||| ||||| || || || || ||||| | || Sbjct 30786 GAGACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGC 30843 Query 79974 -TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 80032 || ||| |||||||||| ||| |||||||| |||||||| ||||| || || || |||| Sbjct 30844 GTAGAAA-AGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGA 30902 Query 80033 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGT 80092 | | | | |||| | ||||| || |||| ||| ||||| | |||| || | |||| Sbjct 30903 AGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGCCTCTTGT 30962 Query 80093 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 80152 | || ||||| || | || | || ||||| ||||||||||||| ||| || | | | Sbjct 30963 TGCCACCCTGGTCGACATAACGTGCTGTGTTGTTATAAACTCTCAGCATGGGGACTAGCC 31022 Query 80153 CATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTG 80212 ||||||| | || || || || | ||| ||||| || | | | || || | | Sbjct 31023 CATTGGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTTGATCTGATGCAGCTGACCG 31082 Query 80213 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 80272 | || ||||| || || || ||||| | || ||| | || | ||| ||||| | Sbjct 31083 CCACGCCGATTCCTCCAGCTGCCTTGGAGATGAGGGCACATTGCTTCAGCGTGTCATAAA 31142 Query 80273 TGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 80332 |||| || ||||| || || ||||| || || || ||||| |||| || | | Sbjct 31143 TGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGT 31202 Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392 | ||||| || || || | ||||| || ||||| || ||||| || || |||| || | Sbjct 31203 TGGTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGGGTGAACCACTTCTCTGACAACAGGT 31262 Query 80393 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTA 80452 |||| ||||| || |||| || |||||| || || || || || || || | ||| | Sbjct 31263 TGTAGGTCTCGATGGCTGCGTCGATATCCGTTTTGTGGATCCCAACAGCCACTCTCATGA 31322 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||||||||| || | || | | ||| ||| || ||||||| ||| || |||| Sbjct 31323 GCATGTGCTGCGGCCGCTCGGCCACTTTGCCATTGATCTTCAACAGGTAGGACCGCTCCA 31382 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 80572 || || || ||||| ||||||| | || ||||| ||| |||| || ||||||||| Sbjct 31383 GCGTCTTGAAGCCAAAGAAGTTGTAGGCGAAATCTCGGTCGAAAATGATGGCCGAGTTGA 31442 Query 80573 GTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTT-GAAATAATCGGAGAAT-- 80629 | || |||| | ||| | || | || | ||| || || || ||||| | Sbjct 31443 GGCGGTCTTTATTCTCAAGAACAATGTCGAGCGT-CTCCTTGGAGATCATGGGAGAGTGG 31501 Query 80630 -GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 80688 |||| |||| || || || |||||||| | ||||||||||| ||||| || | Sbjct 31502 CGTTT---ATTTAAGGGGTTGACGTAGTTGAACAGGTCCTCCATCACATCACTGAACACC 31558 Query 80689 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCT 80748 || || || || ||||| || ||||| ||||| || | ||||| | |||||||| || Sbjct 31559 TTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATGCGCGCGGCGAGGATGGCATAGTCG 31618 Query 80749 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 80808 || |||| || || |||||| || || || |||||||| ||||| | || || || Sbjct 31619 GGGTGTTTAGTGGTGAGAGTGGCGGCGATCTCTGCTGCCAGTGTGTCGAGCTCCACGGTG 31678 Query 80809 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGA 80868 || |||||| | || | || ||||| |||||||| | || | ||||| | | Sbjct 31679 GTGACTCCACTGTACAGACCCTGGATCACCTTCATCGTAATCTGGGCCGGATCCACAAAG 31738 Query 80869 TCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 80927 |||| ||| | ||| || || | || || ||||| ||||||||||| |||||||| Sbjct 31739 TCAGAGTTCAGGCCGTAGCACAGCTTCTGGATGCGAGAGGTGATTTTATCGAACATGAC 31797 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| ||||| || || |||||| || |||| || || || ||||| | Sbjct 29039 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCAGCAATGTGGATGT 29098 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| || || || || ||||||||||| || | ||| || ||||| || | || |||| Sbjct 29099 TCAGGGACTGGCTCTGGTCGATGAAGGCACCGCGGTCGGCGGCCATCTTGAGTATGGTCT 29158 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | |||||||| | |||| | ||| | ||||| Sbjct 29159 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTGTGGAA 29209 >seq7404 Length=21843 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 16232 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 16173 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || | || || || ||||| ||||||||||| || || ||||| |||| Sbjct 16172 TCAGCCAGAAGATCGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 16113 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 16112 CCACCACGCGCTCTCC 16097 >seq1161 Length=118247 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||||||||| || || ||||| | || | || || ||||||| || ||| Sbjct 53422 ACTCGTTTCATAAAGAGGTCTGGGATCCACATGGCGAAGAAAAGGTCTCTGGCCCTCTGC 53363 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || ||||| ||||| || | || | ||| | | | ||| ||||||||||| Sbjct 53362 TCCTCTTTACCTGTGTTCTTCTTCAACTCTAAGAAGTCAAACACATCGGAATGCCACGGC 53303 Query 80059 TCCAAGTA 80066 |||| ||| Sbjct 53302 TCCAGGTA 53295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718105411804720