Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4239 554 6e-153 seq7404 87.8 2e-12 seq1161 87.8 2e-12 >seq4239 Length=33969 Score = 554 bits (614), Expect = 6e-153 Identities = 1321/1980 (67%), Gaps = 33/1980 (2%) Strand=Plus/Plus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||||||||| || || || || | | || || ||||| || |||| | || Sbjct 29833 CTGAATGGACCCGTTATGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGCCCCCT 29892 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || | || | || ||||| ||||| || | ||||| |||||||| | || || Sbjct 29893 CTCCGTCAGGTCTTTGAGCAGATGTGGATTCACGATCTGAAACTCTCCAGAGAGGACCCT 29952 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| || | ||| | |||||||| || |||| || || || Sbjct 29953 GCGGGTGTAGATGTTGCTGGTGTAAGCTTCAATAGACTCATTGTTGCCCAGGATCTGGGC 30012 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGG-- 71286 || || || || ||||| || |||| || ||||| || || | || ||| | || Sbjct 30013 GGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCC--GTGCTTGGCA 30070 Query 71287 ATTTTATCTTTTAG-AGATTCCCAATTCCAA-AGATCCGATGGTACAACNNNNNNNNNNN 71344 || || || || || || |||| | |||| || || | ||| Sbjct 30071 ATCTTCTCCTTCAGCAGCTTCC--AGTCCAGCAGGTCGGTGGGTGTCTTCTCCCACATGT 30128 Query 71345 NNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTT 71404 |||||||| || || || ||| | || || || || || || | Sbjct 30129 CGTACTGGAGGATGCCGTTGCTGACGGGAGAGCCTTCGTACGTCTCATAGGGGCCAAGCT 30188 Query 71405 TTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCT 71464 | || || || || || ||||| | || | || || ||||| || || |||| Sbjct 30189 CAGCCGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAA 30248 Query 71465 TATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTG 71524 | || || || || || ||||| || || || ||| | ||| || || || || | Sbjct 30249 TGTTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCGG 30308 Query 71525 CTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTG 71584 | || || || || || || || || || ||||| | ||| || || |||| ||||| | Sbjct 30309 CCAAACCCTGGACACCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTTTCTGCTTCAG 30368 Query 71585 GAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCA 71644 | | ||||| | ||||| || || || || || | ||| |||||||||||||| || Sbjct 30369 GCACTGGATAGAAGTTAATCTCAATTATCTTGTTTAAGTTTTTGACTATTACTTTGGTCA 30428 Query 71645 CATCCTTTAGTTTGAGAAAATCAAA--TCTCC-CATCTATTACAAACACGTTCAAGGCAA 71701 ||| | |||||| ||| ||||| ||| | || | || ||| ||| | |||| Sbjct 30429 CATACGCTAGTTTCTTAAAGTCAAAAGTCTGCTCAGGGGTGACGTACATGTTGAGTGCAA 30488 Query 71702 CAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGT 71759 || ||||||||||| || || ||||||| | || || |||| || ||||| || Sbjct 30489 TGGAGGCCAGATTACAGACAGCCACCTCATCGTGGCT--GGTGTATTCAATGATTTCTGT 30546 Query 71760 GCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 71819 ||| || || || | ||||||||| |||| ||| || || || ||||| |||| ||||| Sbjct 30547 GCAGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTTGCACGC 30606 Query 71820 ATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 71879 ||||| || || || | || ||||| ||||| |||| || || ||||| || | ||| Sbjct 30607 GTCCTTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCA 30666 Query 71880 GA-CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATA 71938 | | || ||||||| | | |||| ||| || | || ||| ||||| | Sbjct 30667 CAGCTGCT-GAGCCTTCACCAAGCGCTTGACCCTCCCCTCCTTCTCATATGTGGTATAGA 30725 Query 71939 ATCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATC 71997 || ||||| || ||||| ||| | ||| | || || || ||| | ||||||||| Sbjct 30726 GCTTCTCAAACTCCTCCCCCCA-GCACTCGTCCAGCCCCGGGCACTCACTTGGACACATC 30784 Query 71998 AATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 72055 | ||||| ||| | | ||| |||| ||||| || || || || ||||| | | Sbjct 30785 AGAGACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGG 30842 Query 72056 C-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114 | || ||| |||||||||| ||| |||||||| |||||||| ||||| || || || ||| Sbjct 30843 CGTAGAAA-AGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGG 30901 Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTG 72174 || | | | |||| | ||||| || |||| ||| ||||| | |||| |||| ||| Sbjct 30902 AAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGCCTCTTG 30961 Query 72175 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 72234 || || ||||| || | || | || ||||| ||||||||||||| ||| || | | Sbjct 30962 TTGCCACCCTGGTCGACATAACGTGCTGTGTTGTTATAAACTCTCAGCATGGGGACTAGC 31021 Query 72235 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATT 72294 |||||||| || || || || | ||| ||||| || | | | || ||| | Sbjct 31022 CCATTGGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTTGATCTGATGCAGCTGACC 31081 Query 72295 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 72354 | | || ||||| || || || ||||| | || ||| | || | ||| ||||| Sbjct 31082 GCCACGCCGATTCCTCCAGCTGCCTTGGAGATGAGGGCACATTGCTTCAGCGTGTCATAA 31141 Query 72355 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 72414 ||||| || || || || || ||||| || || || ||||| |||| || | | Sbjct 31142 ATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTG 31201 Query 72415 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA 72474 | ||||| || || || | ||||| || ||||| || ||||| || || |||| || Sbjct 31202 TTGGTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGGGTGAACCACTTCTCTGACAACAGG 31261 Query 72475 TTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATT 72534 ||||| ||||| || |||| || |||||| || || || || || || || | ||| Sbjct 31262 TTGTAGGTCTCGATGGCTGCGTCGATATCCGTTTTGTGGATCCCAACAGCCACTCTCATG 31321 Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCC 72594 | ||| ||||| || | || | | ||| ||| || ||||||| |||||| ||| Sbjct 31322 AGCATGTGCTGCGGCCGCTCGGCCACTTTGCCATTGATCTTCAACAGGTAGGACCGCTCC 31381 Query 72595 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 72654 | || || || ||||| ||||||| | || ||||| ||| |||| || |||| ||| Sbjct 31382 AGCGTCTTGAAGCCAAAGAAGTTGTAGGCGAAATCTCGGTCGAAAATGATGGCCGAGTTG 31441 Query 72655 AGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAA-ATAATCGGAGAATG 72713 || || |||| | ||| || || | || | |||| | || || ||||| || Sbjct 31442 AGGCGGTCTTTATTCTCAAGAACAATGTCGAGCGTC-TCCTTGGAGATCATGGGAGAGTG 31500 Query 72714 ---TTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 72770 ||| |||| || || || |||||||| | ||||||||||| ||||| || | Sbjct 31501 GCGTTT---ATTTAAGGGGTTGACGTAGTTGAACAGGTCCTCCATCACATCACTGAACAC 31557 Query 72771 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 72830 || || || || ||||| || ||||| ||||| || | ||||| || |||||||| || Sbjct 31558 CTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATGCGCGCGGCGAGGATGGCATAGTC 31617 Query 72831 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGT 72890 || |||| || || |||||| || || ||||||||||| ||||| | || || || Sbjct 31618 GGGGTGTTTAGTGGTGAGAGTGGCGGCGATCTCTGCTGCCAGTGTGTCGAGCTCCACGGT 31677 Query 72891 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATG 72950 || |||||| | || | || ||||| |||||||| | || | ||||| | | Sbjct 31678 GGTGACTCCACTGTACAGACCCTGGATCACCTTCATCGTAATCTGGGCCGGATCCACAAA 31737 Query 72951 ATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATAAC 73010 |||| ||| | ||| || || | || || ||||| ||||||||||| ||||| || Sbjct 31738 GTCAGAGTTCAGGCCGTAGCACAGCTTCTGGATGCGAGAGGTGATTTTATCGAACATGAC 31797 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || ||||| || || |||||| ||| | || || || ||||| || | Sbjct 29039 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCAGCAATGTGGATGT 29098 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| || || ||||||||||| || | ||| || ||||| || | || |||| Sbjct 29099 TCAGGGACTGGCTCTGGTCGATGAAGGCACCGCGGTCGGCGGCCATCTTGAGTATGGTCT 29158 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | |||||||| | |||| | ||| | ||||| Sbjct 29159 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTGTGGAA 29209 >seq7404 Length=21843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||||| || || || |||||||| ||||| | ||| | Sbjct 16232 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 16173 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| ||||||||||| || || || || |||| Sbjct 16172 TCAGCCAGAAGATCGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 16113 Query 42207 C 42207 | Sbjct 16112 C 16112 >seq1161 Length=118247 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||||||||| || || ||||| | || | || || ||||||| || ||| Sbjct 53422 ACTCGTTTCATAAAGAGGTCTGGGATCCACATGGCGAAGAAAAGGTCTCTGGCCCTCTGC 53363 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || ||||| ||||| || | || | ||| | | | ||| ||||||||||| Sbjct 53362 TCCTCTTTACCTGTGTTCTTCTTCAACTCTAAGAAGTCAAACACATCGGAATGCCACGGC 53303 Query 72142 TCCAAGTA 72149 |||| ||| Sbjct 53302 TCCAGGTA 53295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670986532610480