Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq112 116 3e-21 >seq112 Length=268450 Score = 116 bits (128), Expect = 3e-21 Identities = 133/175 (76%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 25780 GTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCT 25839 |||||||| || || || | |||||||||||| || ||||| ||||| ||||| || || Sbjct 21404 GTGTACTCGGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCCAGGTCGCCTTCC 21463 Query 25840 TCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATC 25899 || || | ||||| || |||| ||||| | ||| |||||||| ||||| ||| Sbjct 21464 TCTCTATCAGTGAAGCCAAGGTTGTCCAGGAAGTCCCGGGACCCATTGGCATCCCAAATC 21523 Query 25900 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 25954 |||||||| ||| | |||||||| |||| ||||| || || ||| || |||||| Sbjct 21524 TTTACCCCTTTCGCCGAGAGCTCCTTGGCATTTGTTGATCC-CTG-CG-ACCACA 21575 Score = 100 bits (110), Expect = 2e-16 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| || || || |||||||| || || || || ||||| | ||||| Sbjct 20171 GCGATCATGTAGGTAAGAAGTGCATAGCTGGCTATATTGAAAGGCACCCCCAGGCCCATA 20230 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 || ||| || | |||||| ||||||||||| ||||| | || | |||||| |||||||| Sbjct 20231 TCACCC-GAACGCTGGTACAGCTGACACGACAGCTCACCATCACACACGTAGAACTGACA 20289 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 || || || ||| || || ||||| || || Sbjct 20290 CAGGGCGTGGCAGGGGGGCAGAGCCATGAG 20319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340062161519454