Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq195 89.7 3e-13 seq47 87.8 9e-13 seq2144 86.0 3e-12 seq736 86.0 3e-12 seq1626 84.2 1e-11 seq1499 84.2 1e-11 seq1789 82.4 4e-11 seq403 82.4 4e-11 >seq195 Length=222814 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | ||||||||| | |||||||||| ||||||| ||||| ||||||| ||| Sbjct 191547 AAAAAT-ACGTTGGCCCATACAGGGATCGAACCCGCGACCTTGGCGTTGTTAGCACCACG 191605 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 191606 CTCTAACCAACTGAGCTAACCGGCC 191630 >seq47 Length=322066 Score = 87.8 bits (96), Expect = 9e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 ||||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||| Sbjct 274443 AATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACC 274502 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 274503 AACTGAGCTAACCGGCC 274519 >seq2144 Length=158317 Score = 86.0 bits (94), Expect = 3e-12 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 49065 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 49124 Query 11528 CCGT 11531 |||| Sbjct 49125 CCGT 49128 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 45775 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 45834 Query 11528 CC 11529 || Sbjct 45835 CC 45836 >seq736 Length=130991 Score = 86.0 bits (94), Expect = 3e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 ||| || | |||||| | |||||||||| ||||||| ||||||||||||| ||||| Sbjct 83833 AAAACATACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCT 83774 Query 11507 CTRACCAACTGAGCTAATGGGCCGTC 11532 || |||||||||||||| |||| || Sbjct 83773 CTAACCAACTGAGCTAACCGGCCATC 83748 >seq1626 Length=143960 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 89622 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 89681 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 89682 CTGAGCTAACCGGCC 89696 >seq1499 Length=189554 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 37623 TTGGCCCGTACGGGGATCGAACCCACGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 37564 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 37563 CTGAGCTAACCGGCC 37549 >seq1789 Length=188195 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 181186 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 181245 Query 11528 CC 11529 || Sbjct 181246 CC 181247 >seq403 Length=176171 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 95465 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 95406 Query 11528 CC 11529 || Sbjct 95405 CC 95404 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261433204357048