Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq2426 172 8e-38 seq136 125 1e-23 >seq2426 Length=102441 Score = 172 bits (190), Expect = 8e-38 Identities = 179/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||||||| |||| || ||| || ||||| |||||||| |||||||| |||||||| Sbjct 31271 TTGACGATGTCAAAGCCTACGATGCCTCCGAATGTGCTGGGCTTCCAGTACTCCGGGGAG 31212 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| ||| |||| | ||| |||||||| || || || |||| ||| | ||| || Sbjct 31211 CAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGAAAGGGGCTCCCATCTCCACCATGGTC 31152 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || ||||||||||| || | ||| || |||||||| | || | ||| | ||||||| Sbjct 31151 TCCCCAAAGATGGCGTTAGGCCTGGGTTTCTCCACCAACAGACCCGGGTAGAGCTCCACA 31092 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || ||||||| |||||| | || ||| | ||||| ||||| || ||||||| Sbjct 31091 GCATCGATGTGTCCGTACATCTCCTCGAGCACTGCAGCCATTTCTTTCTCTCCTG 31037 Score = 107 bits (118), Expect = 3e-18 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| || |||||||| || || |||||| ||| || || || | ||||| Sbjct 29179 ATGAGCCGTGTGGTCTGGAAGAGCCTTTCGTCGTCCCAGTCAGGGTGGACCTCCTTCAGC 29120 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 ||||| ||||| | ||||||||| | |||||||| || ||||||||||| || ||||| Sbjct 29119 ACATCACACACCCGGTTGTGTTCTCGTAGCCAGATGGTGGCGTACATCATCAGGCCAGGG 29060 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||||||| || ||||| || || ||||| | || | || || || | ||||| Sbjct 29059 ACCAGGCCGAACGCCTCGTGGCCCACAGCGAAGCGGTGAGAGTCAGGAACATGAGGAGGG 29000 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 ||| ||||| || || || || || ||||| |||| ||| || || | ||| Sbjct 28999 TAGTGCATGTCGACGCCCACTTCCTTTACTATTGGGGGGTACACTTCTCCATCCAGGATC 28940 Query 9862 TG 9863 || Sbjct 28939 TG 28938 >seq136 Length=251970 Score = 125 bits (138), Expect = 1e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821 ||||| || ||||||||||| |||||||| | |||||||||||| ||| ||| ||| Sbjct 84853 TCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTTCCCAGCAGG 84794 Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881 ||||| ||||| || ||||| |||| ||| | || |||||||| || || || | ||| Sbjct 84793 CCTTTCAGGGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAATATAGCATCAGGA 84734 Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 || | || |||| || || |||| ||| | ||||| ||| || ||||| || || || Sbjct 84733 CGTGCTTTCTCCAGCAGGACGCCGGGGTAGAGCTCCAAAGCATCTATGTCACCATAGAG 84675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708363628321120