Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6074 111 1e-19 seq3162 100 3e-16 >seq6074 Length=24291 Score = 111 bits (122), Expect = 1e-19 Identities = 131/176 (74%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||||||||| ||| ||||||| | || ||||| ||||| ||||| ||||| || Sbjct 4865 ATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTT 4924 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| |||||||| | | ||||| | | || || || | ||||| Sbjct 4925 GTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGAT 4984 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAACATATTTGAGTT 95027 ||| || ||||| || || || ||||||||||||||| || | || ||| ||| || Sbjct 4985 GGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGTTTGC-ACCTATGTGATTT 5039 Score = 109 bits (120), Expect = 5e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || ||||| ||||| ||||| ||||| || Sbjct 4637 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTT 4696 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| |||||||| | | |||||| | | ||||| || | ||||| Sbjct 4697 GTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGAT 4756 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || ||||| || || || |||||||||||||||| Sbjct 4757 GGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGC 4794 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || ||||| ||||| ||||| ||||| || Sbjct 3802 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTT 3861 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| |||||||| | | ||||| | | ||||| || | ||||| Sbjct 3862 GTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGAT 3921 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || ||||| || || || || ||||||||||||| Sbjct 3922 GGTCTTACCAGTGAGGGTCTTGACGAAGATCTGCATGC 3959 >seq3162 Length=48913 Score = 100 bits (110), Expect = 3e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | || || ||||| || | ||| || ||| | ||| | ||| ||| Sbjct 3024 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 2965 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || ||||||| | | ||||| |||||||| || ||||| || || | Sbjct 2964 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGG 2905 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTT 94977 || || ||||| ||| | | ||||||| | ||| || || || | |||||||| || Sbjct 2904 ATCTTGGCCTTCACGTTCTCAATAGTGTCA-CTTGGCTCAACCTCCAGGGTGATGGTCTT 2846 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || || ||||| ||||||||||||| Sbjct 2845 GCCAGTCAGGGTCTTCACGAAGATCTGCATGC 2814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448189224959280