Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq10171 150 3e-32 seq5808 150 3e-32 seq4017 150 3e-32 >seq10171 Length=20212 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| || ||||||||||| || || Sbjct 1236 CGCCAAGCGGCACCGTAAAGTGCTCCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 1295 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || ||||| ||||| |||| || || |||| || |||| Sbjct 1296 CCGCCGGCTGGCTCGCCGCGGCGGAGTGAAGCGCATCTCCGGCCTGATCTACGAGGAGAC 1355 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 1356 CCGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 1415 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | |||||||| |||| | || || Sbjct 1416 GCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTGGTCTATGCTCTGAAGAGGCAGGG 1475 Query 16672 CCG 16674 ||| Sbjct 1476 CCG 1478 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| || ||||||||||| || || Sbjct 13495 CGCCAAGCGGCACCGTAAAGTGCTCCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 13436 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || ||||| ||||| |||| || || |||| || |||| Sbjct 13435 CCGCCGGCTGGCTCGCCGCGGCGGAGTGAAGCGCATCTCCGGCCTGATCTACGAGGAGAC 13376 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 13375 CCGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 13316 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || |||| | || || Sbjct 13315 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCCCTGAAGAGGCAGGG 13256 Query 16672 CCG 16674 ||| Sbjct 13255 CCG 13253 >seq5808 Length=40005 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | || || ||||||||||| || |||||||| || || || Sbjct 35854 CGCTAAGCGTCACCGTAAAGTGCTCCGCGATAACATCCAGGGCATCACCAAACCCGCCAT 35795 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || ||||| ||||| |||| || || |||| || |||| Sbjct 35794 CCGCCGTCTGGCTCGCCGCGGCGGAGTGAAGCGCATCTCCGGCCTGATCTACGAGGAGAC 35735 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 35734 CCGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 35675 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || |||| | || || Sbjct 35674 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCCCTGAAGAGGCAGGG 35615 Query 16672 CCG 16674 ||| Sbjct 35614 CCG 35612 >seq4017 Length=39095 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | || || ||||||||||| || |||||||| || || || Sbjct 2385 CGCTAAGCGTCACCGTAAAGTGCTCCGCGATAACATCCAGGGCATCACCAAACCCGCCAT 2326 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || ||||| ||||| |||| || || |||| || |||| Sbjct 2325 CCGCCGTCTGGCTCGCCGCGGCGGAGTGAAGCGCATCTCCGGCCTGATCTACGAGGAGAC 2266 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 2265 CCGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 2206 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || |||| | || || Sbjct 2205 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCCCTGAAGAGGCAGGG 2146 Query 16672 CCG 16674 ||| Sbjct 2145 CCG 2143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79058561441214