Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4239 556 2e-153 seq7404 105 8e-18 seq1161 84.2 3e-11 >seq4239 Length=33969 Score = 556 bits (616), Expect = 2e-153 Identities = 1318/1977 (67%), Gaps = 27/1977 (1%) Strand=Plus/Plus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 ||||||||| || || || || | | ||||| ||||| || |||| | || Sbjct 29833 CTGAATGGACCCGTTATGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGCCCCCT 29892 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 ||| || | || | || ||||| ||||| || | ||||| |||||||| | || || Sbjct 29893 CTCCGTCAGGTCTTTGAGCAGATGTGGATTCACGATCTGAAACTCTCCAGAGAGGACCCT 29952 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || ||||| || || ||||| || | ||| | |||||||| || |||| || || || Sbjct 29953 GCGGGTGTAGATGTTGCTGGTGTAAGCTTCAATAGACTCATTGTTGCCCAGGATCTGGGC 30012 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 || || || || ||||| || |||| || | ||| || || | |||| | || Sbjct 30013 GGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCAAT 30072 Query 62483 TTTATCTTTTAG-AGGTTCCCAATTCCAA-AGATCCGACGGTACAACNNNNNNNNNNNNN 62540 || || || || || |||| | |||| || || | ||| Sbjct 30073 CTTCTCCTTCAGCAGCTTCC--AGTCCAGCAGGTCGGTGGGTGTCTTCTCCCACATGTCG 30130 Query 62541 NNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 62600 || || || ||||| ||| || || ||| | || || || || || || || Sbjct 30131 TACTGGAGGATGCCGTTGCTGACGGGAGAGCCTTCGTACGTCTCATAGGGGCCAAGCTCA 30190 Query 62601 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62660 | || || || || || ||||| | || |||| || ||||| || ||||||| | Sbjct 30191 GCCGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAATG 30250 Query 62661 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720 || || || || || |||| || || || ||| | ||| || || || || || Sbjct 30251 TTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCGGCC 30310 Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62780 || || || ||||| || || || || || || | ||| || || |||| ||||| || Sbjct 30311 AAACCCTGGACACCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTTTCTGCTTCAGGC 30370 Query 62781 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62840 | ||||| | ||||| || || || || || | ||| |||| ||||||||| |||| Sbjct 30371 ACTGGATAGAAGTTAATCTCAATTATCTTGTTTAAGTTTTTGACTATTACTTTGGTCACA 30430 Query 62841 TCCTTCAGTTTGAGAAAATCAAA--TC-GCCCATCTATTACAAACATGTTCAAGGCAACA 62897 | | ||||| ||| ||||| || || || | || ||||||| | |||| Sbjct 30431 TACGCTAGTTTCTTAAAGTCAAAAGTCTGCTCAGGGGTGACGTACATGTTGAGTGCAATG 30490 Query 62898 GATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGC 62955 || ||||||||||| || || ||||||| | || | |||| || || || |||| Sbjct 30491 GAGGCCAGATTACAGACAGCCACCTCATCGTGGCTGGTG--TATTCAATGATTTCTGTGC 30548 Query 62956 AAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 63015 | || || || | |||||| || |||| ||| || || || ||||| |||| ||||| | Sbjct 30549 AGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGT 30608 Query 63016 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63075 |||| || || ||| |||| ||||| ||||| |||| || || ||||| || | ||| | Sbjct 30609 CCTTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACA 30668 Query 63076 -CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAAT 63134 | || ||||||| | | ||| |||| || | || ||| ||||| | Sbjct 30669 GCTGCT-GAGCCTTCACCAAGCGCTTGACCCTCCCCTCCTTCTCATATGTGGTATAGAGC 30727 Query 63135 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 63194 || ||||| || ||||| | ||||| || || || ||| |||||||||| Sbjct 30728 TTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCCGGGCACTCACTTGGACACATCAGA 30787 Query 63195 GACCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-T 63251 ||||| ||| || | ||| ||||| ||||| || || || || ||||| | || | Sbjct 30788 GACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGT 30845 Query 63252 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63311 | ||| |||||||||| ||| || ||||| |||||||| ||||| || || || ||||| Sbjct 30846 AGAAA-AGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 30904 Query 63312 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63371 | | | |||| | ||||| || |||| ||| ||||| | |||| |||| ||||| Sbjct 30905 TCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGCCTCTTGTTG 30964 Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 || ||||| || | || | || ||||| ||||||||||||| ||| || | | || Sbjct 30965 CCACCCTGGTCGACATAACGTGCTGTGTTGTTATAAACTCTCAGCATGGGGACTAGCCCA 31024 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491 || || | || || || || | ||| ||||| || | | | || || | | Sbjct 31025 TTGGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCC 31084 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | || ||||| || || || ||||| | || ||| | || | ||||||||| || Sbjct 31085 ACGCCGATTCCTCCAGCTGCCTTGGAGATGAGGGCACATTGCTTCAGCGTGTCATAAATG 31144 Query 63552 CCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63611 || || ||||| || || ||||| || || || ||||| |||| || | | | Sbjct 31145 CCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTG 31204 Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| || || || | ||||| || ||||| || ||||| || || || | || ||| Sbjct 31205 GTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGGGTGAACCACTTCTCTGACAACAGGTTG 31264 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || ||||| || |||| ||| |||||| || || || || || || || | ||| | | Sbjct 31265 TAGGTCTCGATGGCTGCGTCGATATCCGTTTTGTGGATCCCAACAGCCACTCTCATGAGC 31324 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 |||||||| || | || | | ||| || || ||||||| |||||| |||| Sbjct 31325 ATGTGCTGCGGCCGCTCGGCCACTTTGCCATTGATCTTCAACAGGTAGGACCGCTCCAGC 31384 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63851 || || || ||||| ||||||| | || ||||| ||| |||| || |||||||||| Sbjct 31385 GTCTTGAAGCCAAAGAAGTTGTAGGCGAAATCTCGGTCGAAAATGATGGCCGAGTTGAGG 31444 Query 63852 TTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAAT---G 63907 || |||| | ||| || || | || | ||| || || || ||||| | | Sbjct 31445 CGGTCTTTATTCTCAAGAACAATGTCGAGCGT-CTCCTTGGAGATCATGGGAGAGTGGCG 31503 Query 63908 TTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 63967 ||| |||| || || || |||||||| | ||||||||||| ||||| || | || Sbjct 31504 TTT---ATTTAAGGGGTTGACGTAGTTGAACAGGTCCTCCATCACATCACTGAACACCTT 31560 Query 63968 ttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGG 64027 || || || ||||| || ||||| ||||| || | ||||| || |||||||| || || Sbjct 31561 CTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATGCGCGCGGCGAGGATGGCATAGTCGGG 31620 Query 64028 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGT 64087 |||| || || |||||| || || || |||||||| ||||| | || || || || Sbjct 31621 GTGTTTAGTGGTGAGAGTGGCGGCGATCTCTGCTGCCAGTGTGTCGAGCTCCACGGTGGT 31680 Query 64088 TACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 64147 |||||| | || | || || || |||||||| | || | ||||| | | || Sbjct 31681 GACTCCACTGTACAGACCCTGGATCACCTTCATCGTAATCTGGGCCGGATCCACAAAGTC 31740 Query 64148 CGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64204 | ||| | ||| || || | || || ||||| ||||||||||| |||||||| Sbjct 31741 AGAGTTCAGGCCGTAGCACAGCTTCTGGATGCGAGAGGTGATTTTATCGAACATGAC 31797 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || ||||| || || |||||| || |||| || || || ||||| | Sbjct 29039 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCAGCAATGTGGATGT 29098 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| || || || || ||||||||||| || | ||| || ||||| || | || |||| Sbjct 29099 TCAGGGACTGGCTCTGGTCGATGAAGGCACCGCGGTCGGCGGCCATCTTGAGTATGGTCT 29158 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | |||||||| | |||| | ||| | ||||| Sbjct 29159 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTGTGGAA 29209 >seq7404 Length=21843 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 16232 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 16173 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || | |||||| || ||||| ||||||||||| || || || || |||| Sbjct 16172 TCAGCCAGAAGATCGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 16113 Query 33446 C 33446 | Sbjct 16112 C 16112 >seq1161 Length=118247 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274 |||||||||||||||||| || || ||||| | || | || || ||||||| || || Sbjct 53423 CACTCGTTTCATAAAGAGGTCTGGGATCCACATGGCGAAGAAAAGGTCTCTGGCCCTCTG 53364 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 ||||| || ||||| ||||| || | || | ||| | | | ||| ||||||||||| Sbjct 53363 CTCCTCTTTACCTGTGTTCTTCTTCAACTCTAAGAAGTCAAACACATCGGAATGCCACGG 53304 Query 63335 TTCCAAGTA 63343 |||| ||| Sbjct 53303 CTCCAGGTA 53295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622805495085680