Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4239 217 4e-51 seq112 87.8 5e-12 >seq4239 Length=33969 Score = 217 bits (240), Expect = 4e-51 Identities = 608/918 (66%), Gaps = 20/918 (2%) Strand=Plus/Minus Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAG 363459 |||||| ||||| |||||||| | |||||||| | | | || || |||||| Sbjct 31389 AAGACGCTGGAGCGGTCCTACCTGTTGAAGATCAATGGCAAAGTGGCCGAGCGGCCGCAG 31330 Query 363460 CATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAA 363519 || ||| | ||| | || ||| |||| ||||| ||||| | || || || || || Sbjct 31329 CACATGCTCATGAGAGTGGCTGTTGGGATCCACAAAACGGATATCGACGCAGCCATCGAG 31270 Query 363520 ACATATAAGCT--TCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACAATGTACAATG 363577 || || || || | | || | ||| ||||| |||||| | || || | | ||| | Sbjct 31269 ACCTACAACCTGTTGTCAGAGAA-GTGG-TTCACCCACGCCTCCCCTACGCTCTTCAACG 31212 Query 363578 CTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCA 363637 | ||||| | |||||| |||| ||||| || || ||||| ||||| || Sbjct 31211 CAGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGCA 31152 Query 363638 TCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAA 363697 |||| || || | |||||| || ||| | ||||| || || |||||| || || |||| Sbjct 31151 TCGAAGGCATTTATGACACGCTGAAGCAATGTGCCCTCATCTCCAAGGCAGCTGGAGGAA 31092 Query 363698 TTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGC-GGCACAGGGGGA 363756 | || || || || | | | || | || ||||| ||| |||||| || Sbjct 31091 TCGGCGTGGCGGTCAGCTGCATCAGATCAACGGGGAGCTACAT-CGCTGGCACAAACGGC 31033 Query 363757 TACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGAC 363816 |||| |||||||| || |||||||| | || | | |||| || || | || |||||| Sbjct 31032 AACTCCAATGGGCTAGTCCCCATGCTGAGAGTTTATAACAACACAGCACGTTATGTCGAC 30973 Query 363817 CAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGAT 363876 |||||||| ||| | || || ||||| ||||| || ||||| || ||| Sbjct 30972 CAGGGTGGCAACAAGAGGCCCGGAGCCTTTGCCATGTACCTGGAGCCCTGGCACTTTGAT 30913 Query 363877 ATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGAT 363936 | ||||| || || ||||| ||| ||||| ||||| ||||| | | || | ||| Sbjct 30912 GTGTTTGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAGAT 30853 Query 363937 CTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG-GCAGGTAAGAA 363995 || ||||| || | ||| | | |||| || |||||| | ||||| ||| |||| Sbjct 30852 CTTTTCTACGCCATGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAAAGCAACCAAGAC 30793 Query 363996 TTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTA 364055 | |||| || | || ||| || || || || || ||| ||||| || || | Sbjct 30792 T-GGTCTCTGATGTGTCCAAGTGAGTGCCCGGGGCTGGACGAGTGCTGGGGGGAGGAGTT 30734 Query 364056 TGTT--GCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCA 364113 || ||||||||| | | ||||| |||||| | || || ||| | || | | Sbjct 30733 TGAGAAGCTCTATACCACA--TATGAGAAGGAGGGGAGGG-TC--AAG-CGCTTGGTGAA 30680 Query 364114 ----CAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATAT 364169 ||| |||| ||| ||||| || || || |||| || || || || || || || Sbjct 30679 GGCTCAGCAGCTGTGGCACGCCATTATCGAGTCCCAGACAGAAACCGGTACGCCATACAT 30620 Query 364170 GTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCA 364229 | ||||||| || |||||||| | ||| |||||||||| | || || || || || Sbjct 30619 GCTGTACAAGGACGCGTGCAACAGGAAGAGCAACCAGCAGAATCTAGGCACCATCAAGAG 30560 Query 364230 GAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289 |||||||| || || || || |||||||||||| | ||| ||| || || ||||| Sbjct 30559 CAGCAACCTCTGCACAGAAATCATTGAATACACCAGCCACGATGAGGTGGCTGTCTGTAA 30500 Query 364290 CCTTGCGTCGATCGCGCT 364307 || || || || || || Sbjct 30499 TCTGGCCTCCATTGCACT 30482 Score = 91.5 bits (100), Expect = 4e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 364967 TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCA 365026 ||||| | |||||||||| | || |||||||| |||||||| ||| | || | Sbjct 29209 TTCCACACGATCTGAAGCAGCTGTATAAAACCGTGTGGGAAATCTCCCAGAAGACCATAC 29150 Query 365027 TTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA 365086 | | ||||| ||||| |||||||| || ||| ||||||||||| | ||| | || Sbjct 29149 TCAAGATGGCCGCCGACCGCGGTGCCTTCATCGACCAGAGCCAGTCCCTGAACATCCACA 29090 Query 365087 TGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAA 365139 | || |||| | || || ||| || || |||||| |||||||| |||||| Sbjct 29089 TTGCTGAGCCGAACTACGGCAAACTGACCAGCATGCACTTCTACGGCTGGAAA 29037 >seq112 Length=268450 Score = 87.8 bits (96), Expect = 5e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 111390 ACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGT 111449 |||||||| || || || | || ||| ||||| |||||||||| ||||| || || Sbjct 21558 ACAAATGCCAAGGAGCTCTCGGCGAAAGGGGTAAAGATTTGGGATGCCAATGGGTCCCGG 21499 Query 111450 GACTTTCTAGATTCAGTTGGTCTTGTC-GACAACGAAGAAGGTGATCTCGGACCAGTTTA 111508 ||||| || || |||| ||| | || | || ||||| || || ||||| || || Sbjct 21498 GACTTCCTGGACAACCTTGG-CTTCACTGATAGAGAGGAAGGCGACCTGGGACCTGTGTA 21440 Query 111509 CGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCA 111553 || || || ||| | ||||||||||| || |||| ||||||||| Sbjct 21439 TGGTTTCCAGTGGAGGCACTTTGGTGCCGAGTACACAACCATGCA 21395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303049707630836