Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4239 172 5e-38 seq6074 127 2e-24 seq1161 118 1e-21 seq3162 111 1e-19 seq356 87.8 2e-12 >seq4239 Length=33969 Score = 172 bits (190), Expect = 5e-38 Identities = 960/1516 (63%), Gaps = 54/1516 (4%) Strand=Plus/Plus Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115 |||| |||| ||||||||| || | | || | || || | ||| ||| | | Sbjct 29919 GATTCACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAAG 29978 Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175 ||||| |||||| || ||||||||||| || ||||| | || |||||||| |||| Sbjct 29979 CTTCAATAGACTCATTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCA 30038 Query 145176 CCA--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATC 145233 || | | || || | || ||||||||| || | ||||| ||| ||| || Sbjct 30039 GCAGCAGACTG--TTCCTCACGCCGTGCTTGGCAATCTTCTCCTTCAGCAGCTTCCAGTC 30096 Query 145234 CCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG 145293 | || || || || ||||||||||||||||| | ||||| | |||| |||| Sbjct 30097 CAGCAGGTCGGTGGGTGTCTTCTCCCACATGTCGTACTGGAGGATGCCGTTGCTGACGGG 30156 Query 145294 GCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCG--AGCTCGCAACTCGCCTCC 145351 ||||| | | || ||| ||| | | || |||||||| || |||||| Sbjct 30157 AGAGCCTTCGTACGTCTCATAGGGGCC--AAGCTCAGCCGCCAGCTCGCAGCTTGCCTCC 30214 Query 145352 AGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTC 145411 || ||| || | || || ||||| || || |||| |||||| || || ||| Sbjct 30215 AGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCCTCGGGGCTT 30274 Query 145412 TCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATG 145471 ||| |||| |||| || | || |||||||| | ||||| | || | || || Sbjct 30275 TCGAACGGGTAACGCATGAGGATGAAGGCATCGGCCAAACCCTGGACACCGATTCCTATT 30334 Query 145472 GGCCGATGTTTCATGTTGCTCAT-----CCTCGCCGACTCGATAGGATATCGATTACGGT 145526 |||| || | ||||| | | | || ||| ||||| | ||| | Sbjct 30335 GGCCTGTGACGCTTGTTGGACTTTTCTGCTTCAGGCACTGGATAGAAG-----TTAATCT 30389 Query 145527 CGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTT-TCAAAG 145585 | || || || || |||||| |||| ||| || || | | | || | ||| | |||| Sbjct 30390 CAATTATCTTGTTTAAGTTTTTGACTATTACTTTGGTCACATAC-GCTAGTTTCTTAAAG 30448 Query 145586 TCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAA 145645 ||||| || || ||| | || | | |||| || || || |||| |||||| Sbjct 30449 TCAAA---AGTCTGCTCAGGGGTGACGTACATGTTGAGTGCAATGGAGGCCAGATTACAG 30505 Query 145646 ACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTG 145705 || ||| ||| ||| | | |||||| | ||| || | ||| | ||||| | ||| Sbjct 30506 ACAGCCACCTCATCGTGGCTGGTGTATTCAATGATTTCTGTGCAGAGGTTGCTGCTCTTG 30565 Query 145706 ATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTAC 145765 ||||| || ||||| ||||| || || ||||||||||||||||||||||| |||||||| Sbjct 30566 ATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCCTTGTACAGCATGTAT 30625 Query 145766 GGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTG---CAAGTCCTGCGCACGC 145822 || || || || ||| | || |||||| ||| || | ||| || | Sbjct 30626 GGCGTACCGGTTTCTGTCTGGGACT---CGATAATGGCGTGCCACAGCTGCTGAGCCTTC 30682 Query 145823 ACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAA 145882 ||| ||| | | ||||| | || ||| | | ||||||| ||||||| | Sbjct 30683 ACCAAGCGCTTGACCCTCCCCTCCTTCTCATATGTGGTATAGAGCTTCTCAAACTCCTCC 30742 Query 145883 CCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTG 145942 || |||| ||| ||| || || |||| | ||||||||||| ||||| | |||| Sbjct 30743 CCCCAGCACTCGTCCAGCCCCGGGCACTCACTTGGACACATCAGAGACCAGTCTTGGTTG 30802 Query 145943 GCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCG 146000 | || | || ||| |||| || || | ||||| ||||| | | || | || Sbjct 30803 CTTTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGATCTCTGGCT 30862 Query 146001 CTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGT 146060 || ||| ||||| || |||| ||||| | || | | | | || || Sbjct 30863 CTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGT 30920 Query 146061 GCCACGGTTCAATATAGACGGCGAGGGCTCC--TTTTCGT-TTGCCACCCTGGTCCACGT 146117 |||| || || | || | ||| | |||||| || | |||||||||||||| || | Sbjct 30921 GCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGCCTCTTGTTGCCACCCTGGTCGACAT 30980 Query 146118 GACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCG 146177 |||| | |||||||| | || | || |||||| | | || ||| |||||| | Sbjct 30981 AACGTGCTGTGTTGTTATAAACTCTCAGCATGGGGACTAGCCCATTGGAGTTGCCGTTTG 31040 Query 146178 T---AGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGC 146234 | || | || | | || || | | ||| || |||||||| || | Sbjct 31041 TGCCAGCG---ATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTC 31097 Query 146235 CGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTAT 146294 | | |||||| || ||| || | ||||| || || ||||| || ||||| | Sbjct 31098 CAGCTGCCTTGGAGATGAGGGCACATTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGT 31157 Query 146295 CGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGA 146354 || | ||| ||||||| ||||| | ||| ||| | | | || || || || Sbjct 31158 CGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGA 31217 Query 146355 ACAACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATA 146413 | | ||| ||| ||||| || || || || || | || || || || ||||| Sbjct 31218 AGAGCGTAGGGGAGGCGTGGGTGAACCACTTCTCTG-ACAACAGGTTGTAGGTCTCGATG 31276 Query 146414 GCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGC 146473 || | | || || || || || | ||| || | |||||||||||| || ||| Sbjct 31277 GCTGCGTCGATATCCGTTTTGTGGATCCCAACAGCCACTCTCATGAGCATGTGCTGCGGC 31336 Query 146474 CGCTCCGCCACTT---GATTGTCAATCTTTAACAAATAG--CCGTTCTCCAGGGTTTTGT 146528 ||||| ||||||| |||| ||||| |||| ||| ||| |||||| || ||| Sbjct 31337 CGCTCGGCCACTTTGCCATTG---ATCTTCAACAGGTAGGACCG--CTCCAGCGTCTTGA 31391 Query 146529 ATCCGAAAAATTTGTA 146544 | || || || ||||| Sbjct 31392 AGCCAAAGAAGTTGTA 31407 >seq6074 Length=24291 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||| || | ||| | ||| |||||||| || |||||||| || Sbjct 3731 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 3790 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 3791 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 3850 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| ||||| | ||| | || ||| ||| ||||| Sbjct 3851 ATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACC 3910 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| ||||| || || || || ||||| ||||||||| Sbjct 3911 TCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATCTGCATG 3958 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||| || | ||| | ||| |||||||| || |||||||| || Sbjct 4566 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 4625 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 4626 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 4685 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| ||||| | ||| | || || ||| ||||| Sbjct 4686 ATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 4745 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 4746 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATG 4793 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||| || | ||| | ||| |||||||| || |||||||| || Sbjct 3958 GCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4017 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 4018 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 4077 Query 131127 GATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 4078 AATGCCTTCCTTGTC 4092 >seq1161 Length=118247 Score = 118 bits (130), Expect = 1e-21 Identities = 86/100 (86%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||||||||| | ||||| |||||| |||||||||| |||||||| ||||| | Sbjct 53943 TGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 53884 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 | || ||||||||||| |||||||||||||||||||| || Sbjct 53883 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGG 53844 >seq3162 Length=48913 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | || | ||| |||||||| || |||||||| ||| Sbjct 3042 CCTCCACGGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2983 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | |||||||||||| |||||| Sbjct 2982 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 2923 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || ||| | | ||| | ||| || | | ||| | Sbjct 2922 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATAGTGTCACTTGGCTCAACC 2863 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | ||| || || || || || || ||||| ||||||||| || Sbjct 2862 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGCCT 2812 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || ||| ||||| | ||| | ||| |||||||| || |||||||| ||| Sbjct 2587 GCCTCCTCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 2528 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || ||||||||||| || |||| | |||||||||||| ||||| Sbjct 2527 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGG 2468 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || || || ||| || |||| | || | || || ||| ||| | Sbjct 2467 GATGCCCTCCTTATCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAAC 2408 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || || ||||||||||| Sbjct 2407 CTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 2360 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || ||| || || | || | || || || || || |||||||| ||| Sbjct 2815 GCCTCCCCTCAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGA 2756 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || ||||||||||| || |||| | |||||||||||| ||||| Sbjct 2755 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGG 2696 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| || || ||| || ||| | | ||| | ||| || ||| ||| | Sbjct 2695 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAAC 2636 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | ||| || || || || || || || |||||||||||| || Sbjct 2635 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATGCCT 2584 >seq356 Length=191405 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || |||||| || | ||| | ||| |||||||| || |||||||| || Sbjct 11450 CCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 11391 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 11390 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 11331 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| ||| | | ||| | || ||| ||| ||||| Sbjct 11330 ATGCCTTCCTTGTCCTGGATTTTAGCCTTAACATTCTCAATGGTGTCGCTGGGCTCGACN 11271 Query 131188 TCGACGGT 131195 | || ||| Sbjct 11270 TTGAGGGT 11263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471905428888320