Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq6976 131 1e-25 seq1494 125 5e-24 seq7294 98.7 7e-16 seq1039 98.7 7e-16 seq16395 95.1 8e-15 seq6074 84.2 1e-11 >seq6976 Length=18777 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 5427 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 5368 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 5367 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 5333 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 18458 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 18399 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 18398 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 18364 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||||||| ||||||| ||||| || |||||||| Sbjct 4817 AAGCCCATTCCCTTGGCTGTGGTTTCGCTAAATAGTAGGTAGGGACAGTGGGAATCTCGT 4758 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||||||||||||||||| |||| Sbjct 4757 TCATCCATTCATGCGCGTCACTAATTAGATAACGA 4723 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| Sbjct 15345 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTTGACTATCGGTCTCGT 15286 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 15285 GCCGGTATTTAGCCTTA 15269 Score = 89.7 bits (98), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 3/80 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGG---TCT 20003 |||||||||||||||||||||||||||||||| | |||||||||| ||||||| ||| Sbjct 4010 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTTGACTATCGGGTCTCT 3951 Query 20004 CGCGGTAATATTTAGCCTTA 20023 | | | |||||||||||| Sbjct 3950 GGTGCTGGTATTTAGCCTTA 3931 >seq1494 Length=212687 Score = 125 bits (138), Expect = 5e-24 Identities = 131/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||| || |||||||| ||||||||| |||||||| Sbjct 203681 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGTGCTCAGACCCAGTTTGATACCAAAAACG 203622 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| |||||||| ||| | | |||| |||||||| | ||||| || | Sbjct 203621 ACCGTTACATCGTCAACGGATCCCATGAGGCGAACAAGTTGCAGGACATGCTTGATGGGT 203562 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || ||||||||||||| || || || ||||| || || || || Sbjct 203561 TCATCAGAAAATTTGTGCTGTGTCCTGAGTGTGACAACCCTGAAACTGATCT 203510 >seq7294 Length=19851 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| Sbjct 3732 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTTGACTATCGGTCTCGT 3791 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 3792 GCCGGTATTTAGCCTTA 3808 >seq1039 Length=155744 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| Sbjct 3728 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTTGACTATCGGTCTCGT 3787 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 3788 GCCGGTATTTAGCCTTA 3804 >seq16395 Length=3681 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||| |||||||||||||||||| | |||||||||| |||||||||||| Sbjct 3545 CTCTCTCTTCAAAATTCTTTTCAACTTTCCCTTAAGGTACTTGTTGACTATCGGTCTCGT 3486 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 3485 GCCGGTATTTAGCCTTA 3469 >seq6074 Length=24291 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||||| || | ||| || ||| |||||| || || ||||| ||||| Sbjct 4794 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 4853 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | ||||| |||||||| || || | || || || | ||| Sbjct 4854 AGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 4913 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| ||||| ||| ||||||| | || || | || || Sbjct 4914 ATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACC 4973 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | || || || || || || | ||| || || || |||||||||||| Sbjct 4974 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGTTT 5024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334872912688538