Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4239 578 5e-160 seq1161 84.2 3e-11 >seq4239 Length=33969 Score = 578 bits (640), Expect = 5e-160 Identities = 1323/1977 (67%), Gaps = 27/1977 (1%) Strand=Plus/Plus Query 62098 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62157 ||||||||| || || || || | | ||||| ||||| || |||| | || Sbjct 29833 CTGAATGGACCCGTTATGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGCCCCCT 29892 Query 62158 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62217 ||| || | || | || ||||| ||||| || | ||||| |||||||| | || || Sbjct 29893 CTCCGTCAGGTCTTTGAGCAGATGTGGATTCACGATCTGAAACTCTCCAGAGAGGACCCT 29952 Query 62218 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 62277 || ||||| || || ||||| || | ||| | ||||||||| || |||| || || || Sbjct 29953 GCGGGTGTAGATGTTGCTGGTGTAAGCTTCAATAGACTCATTGTTGCCCAGGATCTGGGC 30012 Query 62278 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62337 || || || || ||||| || |||| || | ||| || || | |||| | || Sbjct 30013 GGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCAAT 30072 Query 62338 TTTATCTTTTAG-AGGTTCCCAATTCCAA-AGATCCGACGGTACAACNNNNNNNNNNNNN 62395 || || || || || |||| | |||| || || | ||| Sbjct 30073 CTTCTCCTTCAGCAGCTTCC--AGTCCAGCAGGTCGGTGGGTGTCTTCTCCCACATGTCG 30130 Query 62396 NNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 62455 || || || ||||| ||| || || ||| | || || || || || || || Sbjct 30131 TACTGGAGGATGCCGTTGCTGACGGGAGAGCCTTCGTACGTCTCATAGGGGCCAAGCTCA 30190 Query 62456 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62515 | || || || || || ||||| | || |||| || ||||| || ||||||| | Sbjct 30191 GCCGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAATG 30250 Query 62516 TTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 62575 || || || || || |||| || || || ||| | ||| || || || || || Sbjct 30251 TTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCGGCC 30310 Query 62576 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62635 || || || ||||| || || || || || || | ||| || || |||| ||||| || Sbjct 30311 AAACCCTGGACACCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTTTCTGCTTCAGGC 30370 Query 62636 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62695 | ||||| | ||||| || || || || || | ||| |||| ||||||||| |||| Sbjct 30371 ACTGGATAGAAGTTAATCTCAATTATCTTGTTTAAGTTTTTGACTATTACTTTGGTCACA 30430 Query 62696 TCCTTCAGTTTGAGAAAATCAAA--TC-GCCCATCTATTACAAACATGTTCAATGCAACA 62752 | | ||||| ||| ||||| || || || | || ||||||| | ||||| Sbjct 30431 TACGCTAGTTTCTTAAAGTCAAAAGTCTGCTCAGGGGTGACGTACATGTTGAGTGCAATG 30490 Query 62753 GATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGC 62810 || ||||||||||| || || ||||||| | || | |||| || || || |||| Sbjct 30491 GAGGCCAGATTACAGACAGCCACCTCATCGTGGC--TGGTGTATTCAATGATTTCTGTGC 30548 Query 62811 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 62870 | || || || | ||||||||| |||| ||| || || || ||||| |||| ||||| | Sbjct 30549 AGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGT 30608 Query 62871 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 62930 |||| || || ||| |||| ||||| ||||| |||| || || ||||| || | ||| | Sbjct 30609 CCTTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACA 30668 Query 62931 -CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAAT 62989 | || ||||||| | | ||| ||| || | || ||| ||||| | Sbjct 30669 GCTGCT-GAGCCTTCACCAAGCGCTTGACCCTCCCCTCCTTCTCATATGTGGTATAGAGC 30727 Query 62990 CGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAAC 63049 || ||||| || ||||| | |||||| || || || ||| |||||||||| Sbjct 30728 TTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCCGGGCACTCACTTGGACACATCAGA 30787 Query 63050 GACCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-T 63106 ||||| ||| || | ||| ||||| ||||| || || || || ||||| | || | Sbjct 30788 GACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGT 30845 Query 63107 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63166 | ||| |||||||||| ||| || ||||| |||||||| ||||| || || || ||||| Sbjct 30846 AGAAA-AGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 30904 Query 63167 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63226 | | | |||| | ||||| || |||| ||| ||||| | |||| |||| ||||| Sbjct 30905 TCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGCCTCTTGTTG 30964 Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || ||||| || | || | || ||||| ||||||||||||| ||| || | | ||| Sbjct 30965 CCACCCTGGTCGACATAACGTGCTGTGTTGTTATAAACTCTCAGCATGGGGACTAGCCCA 31024 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 ||||| | || || || || | ||| ||||| || | | | || || | | Sbjct 31025 TTGGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCC 31084 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | || ||||| || || || ||||| | || ||| | || | ||| ||||| ||| Sbjct 31085 ACGCCGATTCCTCCAGCTGCCTTGGAGATGAGGGCACATTGCTTCAGCGTGTCATAAATG 31144 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63466 || || || || || || ||||| || || || ||||| |||| || | | | Sbjct 31145 CCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTG 31204 Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| || || || | ||||| || ||||| || ||||| || || || | || ||| Sbjct 31205 GTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGGGTGAACCACTTCTCTGACAACAGGTTG 31264 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || ||||| || |||| ||| |||||| || || || || || || || | ||| | | Sbjct 31265 TAGGTCTCGATGGCTGCGTCGATATCCGTTTTGTGGATCCCAACAGCCACTCTCATGAGC 31324 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 |||||||| || | || | | ||| || || ||||||| |||||| |||| Sbjct 31325 ATGTGCTGCGGCCGCTCGGCCACTTTGCCATTGATCTTCAACAGGTAGGACCGCTCCAGC 31384 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63706 || || || ||||| ||||||| | || ||||| ||| |||| || |||||||||| Sbjct 31385 GTCTTGAAGCCAAAGAAGTTGTAGGCGAAATCTCGGTCGAAAATGATGGCCGAGTTGAGG 31444 Query 63707 TTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATAGGAAAAT---G 63762 || |||| | ||| | || | || | ||| || || || ||| | | | Sbjct 31445 CGGTCTTTATTCTCAAGAACAATGTCGAGCGT-CTCCTTGGAGATCATGGGAGAGTGGCG 31503 Query 63763 TTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 63822 ||| |||| || ||||| |||||||| | ||||||||||| ||||| || | || Sbjct 31504 TTT---ATTTAAGGGGTTGACGTAGTTGAACAGGTCCTCCATCACATCACTGAACACCTT 31560 Query 63823 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGG 63882 || || |||||||| || ||||| ||||| || | ||||| || |||||||| || || Sbjct 31561 CTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATGCGCGCGGCGAGGATGGCATAGTCGGG 31620 Query 63883 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGT 63942 |||| || || |||||| || || || |||||||| ||||| | || || || || Sbjct 31621 GTGTTTAGTGGTGAGAGTGGCGGCGATCTCTGCTGCCAGTGTGTCGAGCTCCACGGTGGT 31680 Query 63943 TACACCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 64002 || ||| | || | || ||||| |||||||| | || | ||||| | | || Sbjct 31681 GACTCCACTGTACAGACCCTGGATCACCTTCATCGTAATCTGGGCCGGATCCACAAAGTC 31740 Query 64003 AGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGAC 64059 || ||| | ||| || || | || || ||||| ||||||||||| |||||||| Sbjct 31741 AGAGTTCAGGCCGTAGCACAGCTTCTGGATGCGAGAGGTGATTTTATCGAACATGAC 31797 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || ||||| || || |||||| || |||| || || || ||||| | Sbjct 29039 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCAGCAATGTGGATGT 29098 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| || || || || ||||||||||| || | ||| || ||||| || | || |||| Sbjct 29099 TCAGGGACTGGCTCTGGTCGATGAAGGCACCGCGGTCGGCGGCCATCTTGAGTATGGTCT 29158 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | |||||||| | |||| | ||| | ||||| Sbjct 29159 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTGTGGAA 29209 >seq1161 Length=118247 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 63070 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63129 |||||||||||||||||| || || ||||| | || | || || ||||||| || || Sbjct 53423 CACTCGTTTCATAAAGAGGTCTGGGATCCACATGGCGAAGAAAAGGTCTCTGGCCCTCTG 53364 Query 63130 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 ||||| || ||||| ||||| || | || | ||| | | | ||| ||||||||||| Sbjct 53363 CTCCTCTTTACCTGTGTTCTTCTTCAACTCTAAGAAGTCAAACACATCGGAATGCCACGG 53304 Query 63190 TTCCAAGTA 63198 |||| ||| Sbjct 53303 CTCCAGGTA 53295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633487864560800