Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6074 125 6e-24 seq3162 104 2e-17 seq356 93.3 4e-14 >seq6074 Length=24291 Score = 125 bits (138), Expect = 6e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 || ||| ||||| || ||||| || || | || || || || |||| || || ||||| Sbjct 5027 TGCAAACATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGA 4968 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 ||| ||| ||| | || || |||| ||||| || |||||||| || ||||| || Sbjct 4967 GCCCAGCGACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCC 4908 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || || | || || ||||||||||||||| | || ||| ||||||| |||| || Sbjct 4907 AGACCAGCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGA 4848 Query 22392 TTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||||||| || || || |||||| | ||| | || |||| Sbjct 4847 CTACAACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCG 4806 >seq3162 Length=48913 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || || || || |||| || || || || ||| Sbjct 2588 ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 2647 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || || || || ||||| || || || || || || Sbjct 2648 GACACTATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCAG 2707 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | || ||| ||||||| ||||||| |||||| Sbjct 2708 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 2767 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||||||||| Sbjct 2768 ATCCAGAAAGAATCCAC 2784 >seq356 Length=191405 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| || |||||||| || ||||| || || || || | || || ||||||||||| Sbjct 11308 AAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAG 11367 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || ||| ||||||| |||| || |||||||| || || || |||||| | ||| Sbjct 11368 CAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACATCCAGAAGGAGTCCACCCTCCAT 11427 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || |||| || | || ||| Sbjct 11428 CTTGTCCTGCGTCTGAGGGGCGGT 11451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419634909313870