Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4239 98.7 2e-15 seq4969 93.3 9e-14 seq1815 93.3 9e-14 seq10833 91.5 3e-13 seq7169 91.5 3e-13 seq5663 91.5 3e-13 seq2842 89.7 1e-12 seq891 89.7 1e-12 seq403 89.7 1e-12 seq3034 87.8 4e-12 seq2465 87.8 4e-12 seq1457 87.8 4e-12 seq3762 86.0 1e-11 seq18014 84.2 4e-11 >seq4239 Length=33969 Score = 98.7 bits (108), Expect = 2e-15 Identities = 468/731 (64%), Gaps = 27/731 (4%) Strand=Plus/Plus Query 293527 TACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCA 293586 ||||| | ||| || |||||| | ||||| || || | || || ||||||| ||||| Sbjct 30131 TACTGGAGGATGCCGTTGCTGACGGGAGAGCCTTCGTACGTCTCATAGGGGCCAAGCTCA 30190 Query 293587 TCAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGG 293646 | | |||||||| |||||| | || || |||| ||| ||| ||||||| | | Sbjct 30191 GCCGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAATG 30250 Query 293647 TTGAGCTTGCGAGCCTGCTCAGAG---TCAAACGGCATCTTCAGCTGGAAGAACACATCC 293703 || ||| |||||| | | | || ||||| || ||| ||| |||| Sbjct 30251 TTCAGCAGCTGAGCCT---CGGGGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCG 30307 Query 293704 TGCAGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCG 293763 || |||||| ||||| | || | || | ||||||||||| | | ||||| || Sbjct 30308 GCCAAACCCTGGACACCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTTTCTGCTTCA 30367 Query 293764 GGAACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTTCTTCGTGAGAACCTTG--- 293820 || || | ||| | | ||||| || ||| | ||| || | || ||| Sbjct 30368 GGCACTGGATAGAAGTTAATCTCAATTATCTTGTTTAAGTTTTTGACTATTACTTTGGTC 30427 Query 293821 ACATGCTTGCGGAGGTCCTCAAAGTCAAA----TGCATCATTCTTGACATAGTTCTTGAG 293876 |||| | || || | || ||||||||| ||| ||| |||| || | ||||| Sbjct 30428 ACATAC--GCT-AGTTTCTTAAAGTCAAAAGTCTGC-TCAGGGGTGACGTACATGTTGAG 30483 Query 293877 CACGATGCTACC--GATGACACACACTGCAGTCTCCTCCTTCGAGGTGTACTCGACAATC 293934 | ||| | ||| ||| ||| || ||| || | |||||| || | || Sbjct 30484 TGCAATGGAGGCCAGATTACAGACA--GCCACCTCATCGTGGCTGGTGTATTCAATGATT 30541 Query 293935 TCAGCACAGAGGTTACTGCCCTTGATGGTGCCCGCATTAGACTGCATGTTCTTGGCATTG 293994 || | |||||||| |||| |||||||||||| ||| ||| || |||| ||| Sbjct 30542 TCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTTG 30601 Query 293995 ACACT-GTCTTTGTTGAGGACATATGGCATACCCGTTTCAATCTGAGTGGTGACCATGGT 294053 ||| ||| |||| || | |||||| |||| ||||| |||| | || |||| Sbjct 30602 -CACGCGTCCTTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACTCGATAATGGC 30660 Query 294054 GTTCCAGACATCGCGAGCCTTCACCACGCGCTTTGCCTTCCCCTCAGACTCATACTTGGT 294113 || ||| | | |||||||||||| |||||| || ||||||| |||||| |||| Sbjct 30661 GTGCCACAGCTGCTGAGCCTTCACCAAGCGCTTGACCCTCCCCTCCTTCTCATATGTGGT 30720 Query 294114 GTAAAGCTCTTCGTATTCCTTGCCATATACATCAGACAGGCCAGGGCACTCGTGAGGGTC 294173 || |||| || | |||| || | || ||| || |||||||| || Sbjct 30721 ATAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCCGGGCACTCACTTGGACA 30780 Query 294174 AAGTAGAGACCA--CTGGGCATCAGTCTCCACGCGCTTCATGAATAGATCATTGACCCAC 294231 | |||||||| || || | | ||||| | ||||||||| || || || |||| Sbjct 30781 CATCAGAGACCAGTCTTGG--TTGCTTTCCACTCTCTTCATGAACAGGTCGGGGATCCAC 30838 Query 294232 ATTGCGTAAAA 294242 || ||||| || Sbjct 30839 ATGGCGTAGAA 30849 >seq4969 Length=27009 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 23855 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 23914 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 23915 GCCCCACGTTGGGC 23928 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 24269 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 24328 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 24329 CCCCACGTTGGGC 24341 >seq1815 Length=99033 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 24008 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 24067 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 24068 GCCCCACGTTGGGC 24081 >seq10833 Length=8883 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1859 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1918 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1919 CCCCACGTTGGGC 1931 >seq7169 Length=14278 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1608 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1549 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1548 CCCCACGTTGGGC 1536 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||| ||| Sbjct 147 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCAAGC 88 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 87 CCCACGTTGGGC 76 >seq5663 Length=31768 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 6582 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 6641 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 6642 CCCCACGTTGGGC 6654 >seq2842 Length=57873 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 53089 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 53148 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 53149 CCCACGTTGGGC 53160 >seq891 Length=125175 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 24438 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 24497 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 24498 CCCACGTTGGGC 24509 >seq403 Length=176171 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 72295 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 72236 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 72235 CCCACGTTGGGC 72224 >seq3034 Length=50565 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 45912 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 45854 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 45853 TCGAGTCCCGGCAGAGA 45837 >seq2465 Length=147643 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 121346 AGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 121405 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 121406 CCCCACGTTGGGC 121418 >seq1457 Length=98189 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| ||||||||| |||||||| ||||||||||||| ||||||||||||||| Sbjct 98127 AGCCCGGCTAGCTCAGTTGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 98068 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 98067 CCCCACGTTGGGC 98055 >seq3762 Length=40072 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 5646 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 5705 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 5706 TCCCGGCAGAGA 5717 >seq18014 Length=6228 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142508 GGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCA 142567 || |||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 3733 GGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCA 3792 Query 142568 CATCGGGCAGAAGT 142581 | | |||| |||| Sbjct 3793 CGTTGGGCGAAAGT 3806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027597147644518